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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:813.4 nTPM
HPA:813.4 nTPM
GTEx:1840.9 nTPM
FANTOM5:1131.3 Scaled Tags Per Million
Pig:389.1 nTPM
Mouse:855.1 nTPM
Allen mouse:25.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 813.4
Sample id Sample description nTPM
Amygdala
nTPM: 813.4
2695 Female, age 67, right hemisphere 940.0
2514 Male, age 75, right hemisphere 896.9
1987 Female, age 91, left hemisphere 795.0
2814 Male, age 76, right hemisphere 723.1
2517 Female, age 94, left hemisphere 711.8
Basal amygdala
nTPM: 688.2
2609 Male, age 75, right hemisphere 996.9
2243 Female, age 91, right hemisphere 799.4
1955 Male, age 76, both hemispheres 683.2
2110 Male, age 80, left hemisphere 667.3
2685 Female, age 94, left hemisphere 549.5
2827 Female, age 67, right hemisphere 432.6
Central amygdala
nTPM: 790.0
2515 Male, age 75, right hemisphere 887.2
2701 Female, age 91, right hemisphere 858.8
2826 Female, age 94, left hemisphere 767.4
2239 Male, age 80, left hemisphere 723.3
1905 Male, age 76, both hemispheres 713.3
Corticomedial amygdala
nTPM: 668.2
2428 Male, age 75, right hemisphere 859.8
2242 Female, age 91, right hemisphere 795.1
2829 Male, age 80, left hemisphere 680.4
2429 Female, age 94, left hemisphere 593.0
2240 Male, age 76, both hemispheres 558.7
2535 Female, age 67, right hemisphere 522.2
Lateral amygdala
nTPM: 725.6
2516 Male, age 75, right hemisphere 911.9
2255 Female, age 91, right hemisphere 864.3
2256 Male, age 80, left hemisphere 798.6
2534 Female, age 94, left hemisphere 677.0
1883 Male, age 76, both hemispheres 666.6
2830 Female, age 67, right hemisphere 435.1
Stria terminalis, bed nucleus
nTPM: 582.2
2201 Male, age 74, unknown 791.8
1974 Female, age 91, both hemispheres 484.1
2486 Female, age 94, both hemispheres 470.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1840.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1840.9
Samples: 152

Max nTPM: 5544.9
Min nTPM: 159.0
Std nTPM: 904.2
Median nTPM: 1766.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 5544.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 4332.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 4328.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3948.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 3593.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 3530.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3504.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 3353.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3352.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3255.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3226.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 3181.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3112.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 3070.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 3065.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2933.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2911.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2910.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2900.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2863.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2832.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2829.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2805.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2768.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2767.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2752.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2650.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2573.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2562.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2553.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2526.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2508.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2488.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2443.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2400.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 2396.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2378.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 2369.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2362.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2335.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 2328.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2270.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2256.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2246.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2246.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2245.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2241.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2225.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2218.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2203.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2176.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2154.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2151.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2146.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2119.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 2083.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2014.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2007.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1976.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1972.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1944.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1912.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1906.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1904.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1896.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1889.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1866.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1863.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1844.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1828.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1825.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1823.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1806.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1788.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1774.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1772.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1760.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1723.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1722.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1700.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1691.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1685.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1637.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1607.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1607.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1602.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1564.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1562.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1560.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1551.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1544.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1539.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1522.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1521.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1519.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1508.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1491.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1477.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1472.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1455.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1449.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1437.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1428.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1370.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1370.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1341.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1333.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1333.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1319.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1304.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1279.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1263.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1221.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1219.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1212.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1212.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1195.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1183.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1170.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1139.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1136.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1135.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1085.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1061.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1049.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1011.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1006.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 992.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 969.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 935.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 858.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 838.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 811.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 803.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 767.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 710.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 692.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 678.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 645.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 638.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 614.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 526.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 518.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 497.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 488.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 472.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 466.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 455.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 335.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 272.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 221.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 159.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1131.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1131.3
FF:10151-102I7 76 years, female 1131.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 389.1
Pig sample Sample description nTPM
Amygdala
nTPM: 389.1
Samples: 4

Max nTPM: 488.9
Min nTPM: 312.9
Sample A Female 488.9
Sample B Female 361.4
Sample C Male 393.2
Sample D Male 312.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 855.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 855.1
Samples: 4

Max nTPM: 1032.0
Min nTPM: 753.9
Sample A Male 842.7
Sample B Male 753.9
Sample C Female 1032.0
Sample D Female 791.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 25.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.8
67936406 Antisense, RP_040604_02_C10, Mouse strain C57BL/6J (56 days, male) 31.0
77620395 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 20.5
79490110 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 16.8

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