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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:823.2 nTPM
HPA:823.2 nTPM
GTEx:772.7 nTPM
FANTOM5:920.1 Scaled Tags Per Million
Pig:438.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 823.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 665.3
2565 Male, age 75, midline 782.3
1981 Female, age 72, midline 754.4
2816 Male, age 47, midline 636.4
2194 Female, age 79, both hemispheres 625.7
2048 Male, age 55, midline 527.8
Cervical spinal cord, dorsal horn
nTPM: 823.2
2721 Male, age 90, both hemispheres 1193.6
1877 Male, age 55, unknown 863.6
2069 Male, age 47, both hemispheres 790.8
2173 Female, age 72, unknown 763.3
2297 Male, age 75, both hemispheres 756.7
2296 Male, age 66, both hemispheres 571.5
Cervical spinal cord, ventral horn
nTPM: 774.6
2809 Male, age 90, both hemispheres 1016.1
2098 Female, age 72, unknown 932.4
2295 Male, age 66, both hemispheres 806.4
2068 Male, age 55, unknown 705.2
2820 Female, age 79, both hemispheres 603.1
2480 Male, age 75, both hemispheres 584.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 772.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 772.7
Samples: 159

Max nTPM: 6118.3
Min nTPM: 181.4
Std nTPM: 627.9
Median nTPM: 613.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 6118.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2749.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2517.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2507.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2327.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2183.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1932.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1712.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1672.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1615.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1614.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1609.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1457.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1423.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1354.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1308.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1236.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1211.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1193.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1154.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1142.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1122.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1095.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1074.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1054.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1045.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1029.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1025.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1025.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1018.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1013.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1011.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1011.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 996.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 995.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 986.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 970.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 962.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 950.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 944.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 927.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 915.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 899.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 889.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 886.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 880.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 864.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 856.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 852.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 849.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 847.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 844.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 818.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 780.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 772.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 769.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 768.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 759.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 752.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 740.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 737.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 725.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 718.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 705.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 693.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 686.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 682.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 680.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 673.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 671.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 660.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 655.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 653.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 648.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 639.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 638.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 632.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 620.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 618.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 613.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 612.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 605.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 596.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 593.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 593.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 586.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 584.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 582.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 575.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 555.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 553.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 552.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 551.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 538.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 538.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 536.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 530.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 520.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 512.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 511.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 507.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 503.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 502.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 502.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 495.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 494.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 488.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 487.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 487.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 485.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 477.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 475.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 465.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 460.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 452.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 450.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 447.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 447.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 443.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 440.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 416.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 411.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 405.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 403.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 400.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 397.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 393.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 391.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 388.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 388.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 382.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 381.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 376.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 375.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 368.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 366.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 363.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 362.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 357.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 336.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 335.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 331.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 329.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 308.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 299.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 299.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 288.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 282.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 267.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 263.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 261.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 250.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 247.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 234.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 223.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 218.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 209.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 207.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 181.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 920.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 920.1
FF:10181-103D1 60 years, female 924.4
FF:10159-103A6 76 years, female 915.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 438.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 297.0
Samples: 4

Max nTPM: 353.1
Min nTPM: 234.1
Sample A Female 296.4
Sample B Female 353.1
Sample C Male 234.1
Sample D Male 304.4
Ventral spinal cord
nTPM: 438.8
Samples: 4

Max nTPM: 552.1
Min nTPM: 363.4
Sample A Female 363.4
Sample B Female 552.1
Sample C Male 452.0
Sample D Male 387.5

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