MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1037.0 nTPM
HPA:1037.0 nTPM
GTEx:2764.5 nTPM
FANTOM5:1576.0 Scaled Tags Per Million
Pig:412.6 nTPM
Mouse:417.2 nTPM
Allen mouse:23.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1037.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 786.6
2586 Male, age 75, left hemisphere 1192.2
2828 Female, age 72, unknown 981.9
2219 Male, age 76, both hemispheres 812.4
2666 Male, age 74, left hemisphere 773.3
1833 Male, age 53, unknown 767.1
1870 Female, age 42, unknown 715.9
1827 Male, age 72, unknown 714.1
1830 Male, age 51, unknown 684.4
2411 Female, age 72, unknown 680.1
2019 Male, age 18, unknown 545.0
Dorsal raphe nucleus
nTPM: 920.9
2047 Male, age 72, unknown 1009.9
2298 Female, age 72, unknown 978.6
2016 Female, age 72, unknown 929.9
2750 Male, age 76, both hemispheres 879.1
1828 Male, age 53, unknown 806.9
Inferior colliculus
nTPM: 766.2
1848 Female, age 42, unknown 784.7
1890 Male, age 53, unknown 772.2
2849 Male, age 72, unknown 754.6
2097 Female, age 72, unknown 753.3
Median raphe nucleus
nTPM: 916.9
2220 Male, age 76, midline 916.9
Pedunculopontine tegmental nucleus
nTPM: 869.7
2338 Male, age 61, both hemispheres 1053.6
1921 Female, age 85, both hemispheres 791.3
2334 Male, age 80, both hemispheres 764.1
Periaquaductal grey, anterior
nTPM: 857.8
1795 Male, age 51, unknown 913.2
1947 Male, age 18, unknown 851.2
2502 Female, age 75, unknown 808.9
Periaquaductal grey, dorsal
nTPM: 798.5
1840 Male, age 53, unknown 984.0
2850 Male, age 76, both hemispheres 814.4
2464 Female, age 72, unknown 716.0
1831 Male, age 72, unknown 679.8
Periaquaductal grey, lateral
nTPM: 765.5
2140 Male, age 76, both hemispheres 810.4
2272 Male, age 74, both hemispheres 758.9
2053 Male, age 18, unknown 727.2
Pretectal area
nTPM: 747.7
2224 Female, age 72, unknown 907.0
2825 Male, age 18, unknown 886.4
1817 Female, age 42, unknown 852.8
1944 Female, age 72, unknown 749.7
1815 Male, age 53, unknown 737.5
2007 Male, age 72, unknown 736.9
2667 Female, age 75, unknown 736.2
1816 Male, age 51, unknown 712.9
2316 Male, age 76, right hemisphere 704.1
2273 Male, age 74, both hemispheres 629.6
2407 Male, age 75, both hemispheres 571.7
Red nucleus
nTPM: 859.7
2227 Male, age 72, unknown 1032.8
2769 Male, age 72, unknown 1022.2
2503 Female, age 72, unknown 1005.5
2584 Male, age 75, left hemisphere 916.5
1954 Female, age 42, unknown 897.7
1904 Male, age 53, unknown 869.5
2725 Female, age 75, unknown 867.1
2823 Male, age 76, right hemisphere 852.9
1821 Female, age 72, unknown 807.7
1865 Male, age 51, unknown 786.7
2588 Male, age 74, left hemisphere 629.1
2785 Male, age 18, unknown 628.9
Substantia nigra
nTPM: 1037.0
2699 Male, age 18, unknown 1626.7
1916 Female, age 42, unknown 1373.7
1851 Male, age 51, unknown 1214.4
2665 Male, age 74, both hemispheres 1001.4
2590 Female, age 75, unknown 941.2
2583 Male, age 75, right hemisphere 924.5
2409 Female, age 72, unknown 894.1
1889 Female, age 72, unknown 881.0
2241 Male, age 72, unknown 791.5
1941 Male, age 53, unknown 721.4
Superior colliculus
nTPM: 710.6
1796 Male, age 53, unknown 869.9
2261 Male, age 18, unknown 781.0
2668 Female, age 75, unknown 772.2
2087 Female, age 72, unknown 771.6
2664 Male, age 75, both hemispheres 724.3
1995 Male, age 72, unknown 707.0
1839 Male, age 51, unknown 644.3
2587 Male, age 74, left hemisphere 627.7
1913 Female, age 42, unknown 621.7
1895 Male, age 76, right hemisphere 585.8
Ventral tegmental area
nTPM: 893.6
1915 Female, age 42, unknown 1126.9
1942 Male, age 51, unknown 955.3
2218 Male, age 76, both hemispheres 900.3
2021 Male, age 53, unknown 867.9
2410 Female, age 72, unknown 781.2
2223 Female, age 72, unknown 730.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2764.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2764.5
Samples: 139

Max nTPM: 8989.2
Min nTPM: 146.5
Std nTPM: 1606.7
Median nTPM: 2630.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8989.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 7837.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 7598.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 6940.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 6421.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 5922.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 5711.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 5471.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 5406.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5390.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 5361.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1576.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1576.0
FF:10158-103A5 76 years, female 1576.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 412.6
Pig sample Sample description nTPM
Midbrain
nTPM: 408.7
Samples: 4

Max nTPM: 516.4
Min nTPM: 276.1
Sample A Female 516.4
Sample B Female 508.1
Sample C Male 334.3
Sample D Male 276.1
Periaqueductal gray
nTPM: 412.6
Samples: 3

Max nTPM: 452.1
Min nTPM: 334.4
Sample B Female 452.1
Sample C Male 451.2
Sample D Male 334.4
Substantia nigra
nTPM: 409.4
Samples: 4

Max nTPM: 478.8
Min nTPM: 345.8
Sample A Female 478.8
Sample B Female 345.8
Sample C Male 425.2
Sample D Male 387.7
Superior colliculi
nTPM: 314.9
Samples: 4

Max nTPM: 386.1
Min nTPM: 207.1
Sample A Female 386.1
Sample B Female 207.1
Sample C Male 320.3
Sample D Male 346.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 417.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 417.3
Samples: 4

Max nTPM: 569.7
Min nTPM: 318.5
Sample A Male 569.7
Sample B Male 392.9
Sample C Female 318.5
Sample D Female 387.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.2
67936406 Antisense, RP_040604_02_C10, Mouse strain C57BL/6J (56 days, male) 28.0
77620395 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 18.4
79490110 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 15.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.