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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
67.196
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:5059.3 nTPM
HPA:5059.3 nTPM
GTEx:3946.5 nTPM
FANTOM5:4015.0 Scaled Tags Per Million
Pig:1844.1 nTPM
Mouse:288.3 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

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Antibody HPA056030Antibody HPA063513Antibody CAB000039
Glial cells MediumLowMedium
Neuronal cells Not detectedNot detectedNot detected







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB000039
Hippocampal formation mean intensity 67.196
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Polymorph layer of the dentate gyrus 52.374
Molecular layer of the dentate gyrus 40.826
Granular dentate gyrus 40.245
CA1 - oriens layer 45.911
CA1 - pyramidal layer 40.740
CA1 - radiatum layer 45.827
CA2 - oriens layer 56.503
CA2 - pyramidal layer 51.837
CA2 - radiatum layer 49.007
CA3 - oriens layer 47.232
CA3 - pyramidal layer 36.212
CA3 - radiatum layer 62.590
Stratum lucidum 42.625
Lacunosum moleculare 42.647
Subiculum 35.168

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 5059.3
Sample id Sample description nTPM
Hippocampus
nTPM: 5059.3
2529 Female, age 94, left hemisphere 5464.4
1898 Male, age 80, left hemisphere 5459.2
2148 Female, age 91, left hemisphere 5281.8
1855 Male, age 76, left hemisphere 5157.1
1911 Female, age 85, right hemisphere 4875.4
2621 Female, age 67, right hemisphere 4118.0
Dentate gyrus
nTPM: 4695.6
2528 Male, age 74, both hemispheres 5965.2
2530 Female, age 94, left hemisphere 5032.6
2010 Male, age 76, both hemispheres 4924.0
2246 Female, age 85, both hemispheres 4308.0
2531 Female, age 67, both hemispheres 4264.2
1927 Female, age 91, both hemispheres 3679.8
Entorhinal gyrus
nTPM: 3710.2
2117 Female, age 91, right hemisphere 6227.5
2686 Male, age 75, right hemisphere 3812.8
1787 Male, age 76, left hemisphere 3641.3
1938 Female, age 85, left hemisphere 3110.9
2764 Male, age 80, right hemisphere 3068.2
2613 Female, age 94, left hemisphere 2400.6
Hippocampus, CA1
nTPM: 4208.1
1873 Female, age 85, both hemispheres 5623.4
2082 Female, age 91, right hemisphere 4270.7
2045 Male, age 76, both hemispheres 4109.3
2527 Male, age 74, both hemispheres 4071.9
2749 Male, age 80, left hemisphere 2965.4
Hippocampus, CA2
nTPM: 4212.6
2437 Female, age 94, left hemisphere 4890.6
2249 Male, age 74, both hemispheres 4664.9
2113 Female, age 91, right hemisphere 4587.9
1963 Male, age 80, left hemisphere 4037.6
1940 Female, age 85, left hemisphere 3991.8
1892 Male, age 76, both hemispheres 3102.9
Hippocampus, CA3
nTPM: 3977.4
2620 Female, age 94, left hemisphere 4969.3
1891 Female, age 85, both hemispheres 4704.3
2861 Female, age 67, both hemispheres 4662.8
2436 Male, age 74, both hemispheres 3363.6
1867 Male, age 76, both hemispheres 3311.7
2137 Male, age 80, left hemisphere 2852.4
Parahippocampal cortex
nTPM: 3176.7
2018 Male, age 76, both hemispheres 4095.3
2250 Female, age 67, right hemisphere 3666.9
2692 Male, age 74, both hemispheres 3456.2
2245 Female, age 91, both hemispheres 3202.3
1990 Female, age 91, right hemisphere 3181.6
1933 Female, age 85, both hemispheres 2976.8
1850 Male, age 80, both hemispheres 2972.9
2693 Female, age 94, both hemispheres 2831.3
2622 Female, age 67, right hemisphere 2740.8
2532 Female, age 72, left hemisphere 2643.2
Perirhinal gyrus
nTPM: 2961.5
2521 Female, age 94, right hemisphere 3431.8
1794 Male, age 80, right hemisphere 3010.4
1841 Female, age 85, right hemisphere 2828.6
2848 Male, age 76, right hemisphere 2785.4
1847 Female, age 91, left hemisphere 2751.3
Subiculum
nTPM: 4291.4
2729 Female, age 91, right hemisphere 6859.2
2042 Male, age 76, both hemispheres 4778.1
2619 Male, age 74, both hemispheres 3899.8
1901 Male, age 80, both hemispheres 3721.2
1977 Female, age 85, both hemispheres 3265.2
2438 Female, age 94, left hemisphere 3225.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3946.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 3946.5
Samples: 197

Max nTPM: 16742.1
Min nTPM: 449.1
Std nTPM: 2333.2
Median nTPM: 3522.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 16742.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 16048.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 11551.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 10716.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 10417.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 9526.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 9012.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 8915.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 8100.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 7826.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 7561.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 7466.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 7156.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 7093.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 7086.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 7021.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 6949.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 6760.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 6702.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 6686.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 6632.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 6560.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 6553.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 6388.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 6155.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 6144.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 6048.9
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 6032.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 5948.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 5827.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 5766.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 5695.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 5671.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 5656.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 5603.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 5562.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 5494.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 5439.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 5417.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 5375.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 5249.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 5205.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 5131.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 5020.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 4984.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 4982.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 4976.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 4903.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 4872.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 4869.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 4832.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 4830.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 4723.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 4722.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 4593.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 4563.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 4548.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 4544.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 4527.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 4525.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 4425.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 4414.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 4408.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 4388.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 4371.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 4289.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 4275.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 4223.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 4214.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 4204.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 4190.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 4187.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 4126.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 4063.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 4035.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 4009.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 4002.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 3990.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 3973.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 3888.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 3886.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 3874.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 3858.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 3849.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 3845.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 3842.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 3770.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 3753.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 3736.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 3654.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 3640.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 3599.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 3583.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 3580.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 3574.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 3567.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 3556.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 3555.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 3522.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 3427.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 3426.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 3401.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 3354.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 3349.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 3337.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 3308.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 3304.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 3289.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 3277.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 3224.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 3224.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 3169.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 3154.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 3149.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 3129.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 3126.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 3124.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 3122.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 3066.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 3031.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 3011.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 3001.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 2997.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 2973.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 2936.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 2898.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2875.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 2863.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 2763.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 2756.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 2754.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 2731.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 2670.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 2666.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 2662.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 2651.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 2644.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 2638.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 2629.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 2623.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 2588.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 2578.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 2567.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 2549.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 2548.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 2519.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 2519.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 2516.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 2502.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 2493.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 2441.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 2411.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 2375.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 2374.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 2330.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 2315.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 2312.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 2303.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 2300.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2277.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 2253.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 2172.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 2083.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 2067.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 2059.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 2015.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 2003.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1979.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1970.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 1932.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1917.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1911.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1905.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1892.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 1832.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1826.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1770.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 1751.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1623.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1586.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1561.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1452.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1433.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1394.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1364.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 1353.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1293.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1290.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1223.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 1078.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 1005.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 967.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 856.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 686.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 583.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 472.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 449.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 4015.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 4015.0
FF:10153-102I9 76 years, female 5207.0
FF:10169-103B7 60 years, female 2823.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1844.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 1781.4
Samples: 4

Max nTPM: 2037.8
Min nTPM: 1315.2
Sample A Female 2030.5
Sample B Female 1742.0
Sample C Male 2037.8
Sample D Male 1315.2
Entorhinal cortex
nTPM: 809.9
Samples: 4

Max nTPM: 982.5
Min nTPM: 429.8
Sample A Female 982.5
Sample B Female 909.1
Sample C Male 918.1
Sample D Male 429.8
Subiculum
nTPM: 1243.2
Samples: 4

Max nTPM: 1419.6
Min nTPM: 1036.7
Sample A Female 1222.1
Sample B Female 1419.6
Sample C Male 1294.4
Sample D Male 1036.7
Ventral hippocampus
nTPM: 1844.1
Samples: 4

Max nTPM: 2429.6
Min nTPM: 1365.5
Sample A Female 2058.2
Sample B Female 1523.1
Sample C Male 2429.6
Sample D Male 1365.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 288.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 166.5
Samples: 4

Max nTPM: 216.3
Min nTPM: 136.4
Sample A Male 171.5
Sample B Male 136.4
Sample C Female 216.3
Sample D Female 141.8
Hippocampal formation
nTPM: 288.3
Samples: 4

Max nTPM: 307.3
Min nTPM: 266.8
Sample A Male 276.8
Sample B Male 266.8
Sample C Female 302.3
Sample D Female 307.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
1358 Antisense, RP_Baylor_253913, Mouse strain C57BL/6J (56 days, male) 4.3
1357 Antisense, RP_Baylor_253913, Mouse strain C57BL/6J (56 days, male) 4.1
79591671 Antisense, RP_071204_04_G06, Mouse strain C57BL/6J (56 days, male) 3.2
79913385 Antisense, RP_071204_04_G06, Mouse strain C57BL/6J (56 days, male) 2.2

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