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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:10040.2 nTPM
HPA:10040.2 nTPM
GTEx:15018.9 nTPM
FANTOM5:10306.8 Scaled Tags Per Million
Pig:7184.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 10040.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 10040.2
1981 Female, age 72, midline 12793.4
2048 Male, age 55, midline 12769.3
2816 Male, age 47, midline 8730.1
2194 Female, age 79, both hemispheres 8500.6
2565 Male, age 75, midline 7407.7
Cervical spinal cord, dorsal horn
nTPM: 8240.1
2173 Female, age 72, unknown 12901.4
1877 Male, age 55, unknown 9013.5
2296 Male, age 66, both hemispheres 8742.2
2069 Male, age 47, both hemispheres 7532.2
2721 Male, age 90, both hemispheres 7451.7
2297 Male, age 75, both hemispheres 3799.3
Cervical spinal cord, ventral horn
nTPM: 9953.6
2098 Female, age 72, unknown 17645.8
2809 Male, age 90, both hemispheres 11354.6
2295 Male, age 66, both hemispheres 9698.9
2068 Male, age 55, unknown 7998.4
2480 Male, age 75, both hemispheres 6613.0
2820 Female, age 79, both hemispheres 6410.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15018.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 15018.9
Samples: 159

Max nTPM: 52926.2
Min nTPM: 2600.8
Std nTPM: 6878.6
Median nTPM: 13568.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 52926.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 35706.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 33768.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 29908.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 29047.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 28876.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 28697.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 26907.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 25946.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 25710.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 25089.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 24050.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 23922.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 23858.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 23774.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 23626.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 23413.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 23266.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 23024.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 22891.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 22559.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 22263.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 22188.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 22165.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 22085.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 21845.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 21637.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 20823.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 20658.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 20639.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 20482.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 20361.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 20134.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 19531.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 19491.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 19423.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 19318.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 19245.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 19174.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 19135.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 18629.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 18614.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 18579.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 18528.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 18487.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 18104.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 18050.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 17999.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 17807.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 17416.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 16839.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 16830.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 16618.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 16447.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 16223.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 16195.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 15991.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 15903.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 15851.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 15634.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 15553.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 15485.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 15447.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 15434.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 15394.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 15340.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 15221.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 15126.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 15075.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 14942.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 14832.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 14645.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 14526.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 14432.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 14166.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 14129.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 13787.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 13730.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 13576.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 13568.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 13440.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 13418.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 13351.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 13269.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 13196.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 13036.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 13001.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 12866.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 12696.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 12688.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 12654.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 12606.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 12578.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 12371.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 12341.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 12207.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 12195.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 12188.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 12165.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 12066.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 11767.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 11761.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 11484.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 11375.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 11373.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 11262.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 11228.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 11089.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 11060.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 10993.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 10985.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 10958.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 10955.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 10784.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 10777.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 10737.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 10672.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 10446.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 10391.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 10377.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 10342.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 10279.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 10232.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 9849.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 9713.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 9649.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 9560.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 9334.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 9305.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 9184.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 9125.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 9120.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 9064.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 9040.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 9025.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 8825.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 8768.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 8718.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 8564.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 8536.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 8231.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 8219.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 8164.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 7796.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 7737.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 7598.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 7597.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 7177.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 6996.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 6851.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 6836.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 6761.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 5886.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 5838.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 4452.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 4304.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 3867.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 3271.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2600.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 10306.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 10306.8
FF:10159-103A6 76 years, female 11613.6
FF:10181-103D1 60 years, female 9000.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7184.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 5136.8
Samples: 4

Max nTPM: 6528.1
Min nTPM: 4256.9
Sample A Female 4403.5
Sample B Female 6528.1
Sample C Male 5358.5
Sample D Male 4256.9
Ventral spinal cord
nTPM: 7184.1
Samples: 4

Max nTPM: 8012.1
Min nTPM: 6069.7
Sample A Female 6734.2
Sample B Female 7920.4
Sample C Male 6069.7
Sample D Male 8012.1

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