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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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80.082
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:9204.1 nTPM
HPA:9204.1 nTPM
FANTOM5:6960.8 Scaled Tags Per Million
Pig:3268.7 nTPM
Allen mouse:4.5 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody CAB000039
Pons mean intensity 80.082
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 13.806
Parabrachial nucleus 42.916
Principle sensory trigeminal nucleus 11.575
Locus coeruleus 67.724
Pontine nucleus 28.747
Vestibular nucleus 18.840
Pontine reticular nucleus, oral 12.527
Lateral lemniscus 12.145
Superior paraolivary nucleus 25.773

PONS - HPA Brain RNA-seq
Max nTPM 9204.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 4947.1
2090 Male, age 80, both hemispheres 5944.2
2301 Female, age 85, both hemispheres 5742.4
1984 Male, age 76, both hemispheres 4501.5
2188 Female, age 91, both hemispheres 3600.3
Dorsal cochlear nucleus
nTPM: 6152.6
2058 Male, age 76, both hemispheres 7303.3
2802 Male, age 74, right hemisphere 6865.6
2378 Male, age 80, both hemispheres 6546.0
2370 Male, age 61, both hemispheres 5488.1
2187 Female, age 91, both hemispheres 4560.1
Dorsal tegmental nucleus
nTPM: 5201.5
2326 Male, age 74, both hemispheres 5451.9
1936 Male, age 76, left hemisphere 5440.0
2358 Male, age 61, both hemispheres 5218.9
2083 Male, age 80, both hemispheres 4695.3
Dorsolateral tegmental area
nTPM: 4681.4
2360 Male, age 74, both hemispheres 5611.9
2141 Male, age 76, both hemispheres 4821.6
2654 Male, age 80, both hemispheres 4800.0
2337 Male, age 61, both hemispheres 4239.5
2751 Female, age 85, both hemispheres 3934.2
Kolliker-Fuse nucleus
nTPM: 5508.8
2315 Male, age 76, right hemisphere 9120.4
2163 Male, age 80, both hemispheres 4082.5
2793 Female, age 91, left hemisphere 3323.3
Lateral lemniscal nuclei
nTPM: 3343.0
2746 Female, age 85, left hemisphere 4375.7
2169 Male, age 76, both hemispheres 3537.9
2453 Male, age 74, right hemisphere 3508.4
2036 Male, age 80, both hemispheres 2736.8
2320 Female, age 91, left hemisphere 2556.2
Lateral parabrachial nucleus
nTPM: 5787.8
2139 Female, age 85, right hemisphere 6449.9
2792 Male, age 76, both hemispheres 6394.1
2013 Male, age 80, both hemispheres 5596.9
2790 Male, age 61, both hemispheres 4710.4
Lateral vestibular nucleus
nTPM: 5232.1
2311 Male, age 80, both hemispheres 5871.4
2184 Male, age 76, both hemispheres 4592.9
Locus coeruleus
nTPM: 4355.3
2317 Female, age 72, unknown 5095.1
1980 Male, age 76, both hemispheres 4850.7
2123 Female, age 91, both hemispheres 4576.6
2788 Male, age 74, unknown 4382.7
2162 Male, age 80, both hemispheres 4121.5
2014 Male, age 55, unknown 3784.4
2720 Male, age 74, both hemispheres 3675.8
Medial olivary nucleus
nTPM: 9204.1
2138 Female, age 91, both hemispheres 11850.3
1943 Male, age 61, both hemispheres 11347.1
2851 Male, age 80, both hemispheres 7466.2
1962 Male, age 76, both hemispheres 6152.7
Medial parabrachial nucleus
nTPM: 4251.8
2786 Male, age 76, both hemispheres 4561.8
2156 Male, age 61, both hemispheres 4372.7
2854 Male, age 80, both hemispheres 4256.4
2463 Female, age 85, right hemisphere 4132.3
2170 Female, age 91, both hemispheres 3935.9
Medial periolivary nuclei
nTPM: 4235.2
2791 Male, age 74, right hemisphere 5278.9
2063 Male, age 76, both hemispheres 4586.8
2081 Male, age 80, both hemispheres 4435.2
2171 Female, age 85, both hemispheres 3520.7
2458 Female, age 91, both hemispheres 3354.4
Motor facial nucleus
nTPM: 4329.8
2126 Male, age 61, both hemispheres 5025.1
2365 Male, age 74, right hemisphere 4748.1
2062 Male, age 76, both hemispheres 4610.8
2795 Female, age 91, both hemispheres 4468.2
2697 Female, age 85, both hemispheres 4032.2
2327 Male, age 80, both hemispheres 3094.4
Motor trigeminal nucleus
nTPM: 3935.6
2309 Male, age 76, both hemispheres 4658.6
2335 Male, age 61, both hemispheres 4551.0
2560 Male, age 74, both hemispheres 3852.0
2079 Male, age 80, both hemispheres 3322.3
2321 Female, age 91, both hemispheres 3294.0
Nuclei of the trapezoid body
nTPM: 3953.0
1983 Male, age 76, both hemispheres 4852.9
2166 Male, age 80, both hemispheres 4241.9
2735 Female, age 85, both hemispheres 3818.7
2368 Female, age 91, both hemispheres 3811.7
2159 Male, age 61, both hemispheres 3039.8
Paramedian reticular nucleus
nTPM: 4666.5
2057 Male, age 80, both hemispheres 5337.0
2052 Male, age 76, both hemispheres 5021.4
2313 Male, age 61, both hemispheres 4293.3
2050 Female, age 85, both hemispheres 4014.5
Pontine nuclei
nTPM: 3530.7
2109 Female, age 72, unknown 5113.5
2115 Male, age 80, left hemisphere 4153.8
1863 Male, age 55, unknown 4126.6
1968 Male, age 76, left hemisphere 3828.2
2319 Female, age 91, both hemispheres 2955.8
2787 Female, age 85, both hemispheres 2902.1
2454 Male, age 74, left hemisphere 2749.7
2727 Male, age 61, right hemisphere 2415.8
Pontine raphe nucleus
nTPM: 4210.4
2853 Male, age 76, midline 4827.3
2122 Female, age 85, midline 3593.5
Posteroventral cochlear nucleus
nTPM: 4706.3
2371 Male, age 61, both hemispheres 5832.2
2070 Male, age 76, both hemispheres 5010.7
2341 Male, age 80, both hemispheres 4659.8
2752 Female, age 85, both hemispheres 4436.2
2135 Female, age 91, both hemispheres 3592.5
Principal sensory trigeminal nucleus
nTPM: 3679.9
2324 Male, age 76, both hemispheres 5103.4
2158 Male, age 61, both hemispheres 3550.8
2008 Male, age 80, left hemisphere 3254.2
2367 Female, age 91, left hemisphere 2811.0
Reticular pontine nucleus, caudal
nTPM: 3629.6
2092 Male, age 76, both hemispheres 4754.6
2559 Male, age 74, both hemispheres 3911.5
2457 Female, age 91, both hemispheres 3122.4
2332 Male, age 80, right hemisphere 2729.8
Reticular pontine nucleus, oral
nTPM: 3625.2
2167 Male, age 76, both hemispheres 4569.7
1939 Male, age 80, both hemispheres 4133.3
2012 Female, age 85, both hemispheres 3595.4
2361 Male, age 74, both hemispheres 2957.5
2366 Female, age 91, both hemispheres 2870.2
Reticulotegmental nucleus
nTPM: 4025.2
2452 Male, age 74, both hemispheres 4227.3
2325 Male, age 76, both hemispheres 4128.8
2333 Male, age 80, both hemispheres 3953.0
2322 Female, age 91, both hemispheres 3791.7
Spinal trigeminal nucleus, oral
nTPM: 4305.0
1978 Male, age 76, both hemispheres 4700.1
2737 Female, age 85, both hemispheres 4211.6
2164 Male, age 80, both hemispheres 4003.2
Subcoeruleus area
nTPM: 4038.3
2451 Male, age 74, both hemispheres 4858.2
2369 Female, age 85, left hemisphere 3959.1
1958 Male, age 80, both hemispheres 3920.4
2323 Female, age 91, left hemisphere 3775.7
2089 Male, age 76, left hemisphere 3678.0
Superior olive
nTPM: 3887.1
2364 Male, age 74, right hemisphere 5089.0
2020 Male, age 76, both hemispheres 4158.0
2329 Male, age 80, right hemisphere 3578.3
1875 Female, age 85, both hemispheres 3360.4
2561 Female, age 91, both hemispheres 3249.6
Superior vestibular nucleus
nTPM: 7234.1
2061 Male, age 76, both hemispheres 8201.2
2383 Male, age 74, both hemispheres 7482.6
2015 Male, age 80, both hemispheres 6018.4
Ventral periolivary nuclei
nTPM: 3934.7
2130 Female, age 85, both hemispheres 4770.4
2165 Male, age 80, both hemispheres 3985.4
2023 Male, age 76, both hemispheres 3948.1
2794 Female, age 91, left hemisphere 3034.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 4377.4
2359 Male, age 61, both hemispheres 5122.7
2840 Female, age 85, both hemispheres 4581.5
1959 Male, age 76, both hemispheres 4462.4
2161 Male, age 80, both hemispheres 4317.6
2449 Male, age 74, both hemispheres 4019.0
2456 Female, age 91, both hemispheres 3760.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 6960.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 6960.8
FF:10165-103B3 76 years, female 7037.0
FF:10182-103D2 60 years, female 6884.6
Pons
Scaled Tags Per Million: 3613.1
FF:10033-101E6 18-54 years, mixed 3613.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 3268.7
Pig sample Sample description nTPM
Pons
nTPM: 3268.8
Samples: 4

Max nTPM: 3996.0
Min nTPM: 2912.2
Sample A Female 3191.7
Sample B Female 2912.2
Sample C Male 2975.1
Sample D Male 3996.0

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 4.5
1358 Antisense, RP_Baylor_253913, Mouse strain C57BL/6J (56 days, male) 6.3
1357 Antisense, RP_Baylor_253913, Mouse strain C57BL/6J (56 days, male) 5.2
79591671 Antisense, RP_071204_04_G06, Mouse strain C57BL/6J (56 days, male) 2.8
79913385 Antisense, RP_071204_04_G06, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.