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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:117.7 nTPM
GTEx:117.7 nTPM
FANTOM5:22.3 Scaled Tags Per Million
Pig:76.9 nTPM
Mouse:29.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 117.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 117.7
Samples: 105

Max nTPM: 373.8
Min nTPM: 9.6
Std nTPM: 76.7
Median nTPM:
351_1 91 years, male 373.8
384_1 83 years, male 327.0
375_1 74 years, female 321.9
293_1 68 years, female 269.4
308_1 70 years, female 267.4
313_1 79 years, female 265.8
237_1 82 years, male 260.8
452_1 88 years, female 255.8
406_1 79 years, male 233.1
447_1 81 years, male 233.0
353_1 82 years, female 232.8
319_1 81 years, male 227.0
354_1 81 years, female 224.8
526_1 61 years, male 215.4
218_1 71 years, female 213.9
480_1 63 years, male 211.5
321_1 62 years, female 208.9
2_1 77 years, female 199.7
349_1 83 years, male 199.0
295_1 61 years, female 189.8
42_1 85 years, male 189.3
4_1 88 years, female 188.8
348_1 84 years, male 188.0
41_1 94 years, female 182.4
389_1 86 years, female 181.8
317_1 60 years, male 181.7
322_1 76 years, male 173.4
6_1 73 years, female 166.1
350_1 84 years, female 163.7
506_1 65 years, male 151.7
264_1 73 years, female 150.0
320_1 89 years, female 149.8
117_1 61 years, male 145.1
99_1 64 years, male 133.5
307_1 66 years, female 131.4
291_1 76 years, male 125.7
173_1 67 years, male 123.9
17_1 71 years, male 118.0
292_1 71 years, male 118.0
355_1 70 years, female 113.2
377_1 82 years, female 108.2
324_1 76 years, male 104.0
251_1 78 years, male 103.5
265_1 87 years, male 101.1
376_1 75 years, female 100.7
315_1 62 years, female 97.5
347_1 72 years, male 96.8
286_1 68 years, female 94.8
396_1 62 years, male 94.8
153_1 70 years, female 94.5
119_1 70 years, female 89.8
145_1 84 years, male 89.8
316_1 62 years, male 89.1
495_1 57 years, female 89.1
311_1 78 years, male 88.4
414_1 84 years, female 88.0
177_1 74 years, male 86.5
137_1 83 years, male 86.2
379_1 60 years, male 85.4
352_1 62 years, male 85.0
386_1 76 years, male 83.8
356_1 87 years, female 83.3
163_1 78 years, male 81.4
314_1 67 years, male 81.0
217_1 76 years, male 80.9
394_1 75 years, female 79.8
405_1 91 years, male 76.5
162_1 79 years, female 74.3
189_1 76 years, male 73.8
254_1 77 years, female 73.2
491_1 89 years, female 71.0
172_1 72 years, female 70.7
120_1 70 years, female 69.0
288_1 66 years, female 66.6
139_1 64 years, female 66.2
335_1 73 years, female 65.0
9_1 66 years, female 63.5
109_1 81 years, female 63.1
490_1 67 years, female 61.7
517_1 88 years, male 61.7
35_1 74 years, female 57.8
126_1 63 years, male 57.2
468_1 89 years, male 56.9
115_1 83 years, male 56.4
229_1 69 years, female 55.4
243_1 75 years, male 53.0
89_1 63 years, male 51.9
499_1 55 years, female 48.2
415_1 77 years, female 48.1
404_1 82 years, female 46.0
318_1 68 years, male 45.2
518_1 75 years, female 41.0
425_1 59 years, female 40.8
266_1 85 years, male 40.2
43_1 64 years, female 39.6
32_1 67 years, male 38.1
81_1 67 years, male 36.5
501_1 88 years, male 35.0
466_1 57 years, female 34.6
18_1 88 years, male 33.9
503_1 68 years, male 32.9
142_1 61 years, female 29.7
413_1 59 years, female 26.2
149_1 88 years, male 21.5
246_1 77 years, male 9.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 22.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 22.3
FF:10030-101E3 24-65 years, mixed 22.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.9
Pig sample Sample description nTPM
Retina
nTPM: 76.9
Samples: 4

Max nTPM: 123.1
Min nTPM: 53.8
Sample A Female 53.8
Sample B Female 69.9
Sample C Male 123.1
Sample D Male 60.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 29.3
Mouse sample Sample description nTPM
Retina
nTPM: 29.3
Samples: 4

Max nTPM: 34.9
Min nTPM: 26.2
Sample A Male 27.1
Sample B Male 28.9
Sample C Female 26.2
Sample D Female 34.9

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.