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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:84.1 nTPM
HPA:84.1 nTPM
GTEx:51.0 nTPM
FANTOM5:17.7 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 84.1
Sample id Sample description nTPM
Amygdala
nTPM: 84.1
1987 Female, age 91, left hemisphere 87.1
2514 Male, age 75, right hemisphere 85.3
2695 Female, age 67, right hemisphere 84.9
2517 Female, age 94, left hemisphere 83.1
2814 Male, age 76, right hemisphere 80.3
Basal amygdala
nTPM: 80.3
1955 Male, age 76, both hemispheres 83.0
2243 Female, age 91, right hemisphere 82.1
2110 Male, age 80, left hemisphere 80.9
2609 Male, age 75, right hemisphere 79.7
2685 Female, age 94, left hemisphere 79.0
2827 Female, age 67, right hemisphere 77.2
Central amygdala
nTPM: 83.1
2826 Female, age 94, left hemisphere 86.8
2515 Male, age 75, right hemisphere 85.7
2701 Female, age 91, right hemisphere 83.5
1905 Male, age 76, both hemispheres 79.7
2239 Male, age 80, left hemisphere 79.6
Corticomedial amygdala
nTPM: 81.4
2240 Male, age 76, both hemispheres 84.2
2428 Male, age 75, right hemisphere 83.8
2242 Female, age 91, right hemisphere 81.9
2429 Female, age 94, left hemisphere 80.5
2829 Male, age 80, left hemisphere 79.7
2535 Female, age 67, right hemisphere 78.3
Lateral amygdala
nTPM: 81.9
2256 Male, age 80, left hemisphere 84.4
2255 Female, age 91, right hemisphere 82.9
2534 Female, age 94, left hemisphere 82.2
1883 Male, age 76, both hemispheres 81.4
2830 Female, age 67, right hemisphere 80.5
2516 Male, age 75, right hemisphere 80.1
Stria terminalis, bed nucleus
nTPM: 78.7
2201 Male, age 74, unknown 79.0
1974 Female, age 91, both hemispheres 78.8
2486 Female, age 94, both hemispheres 78.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 51.0
Samples: 152

Max nTPM: 150.7
Min nTPM: 12.9
Std nTPM: 27.3
Median nTPM: 44.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 150.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 148.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 143.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 127.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 124.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 119.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 119.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 118.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 103.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 100.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 99.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 99.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 92.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 91.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 88.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 88.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 85.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 82.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 79.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 79.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 78.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 76.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 73.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 73.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 72.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 72.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 72.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 70.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 68.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 65.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 65.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 64.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 64.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 64.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 63.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 62.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 61.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 61.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 61.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 59.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 59.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 59.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 58.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 58.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 57.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 56.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 56.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 55.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 54.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 54.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 54.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 53.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 53.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 53.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 53.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 53.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 52.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 51.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 51.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 51.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 50.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 50.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 49.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 49.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 49.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 48.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 48.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 48.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 48.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 47.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 47.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 46.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 46.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 45.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 45.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 44.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 43.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 43.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 43.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 43.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 42.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 41.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 41.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 41.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 41.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 41.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 40.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 39.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 39.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 39.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 39.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 39.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 38.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 38.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 38.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 38.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 38.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 38.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 37.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 35.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 35.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 35.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 34.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 33.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 33.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 33.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 33.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 32.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 32.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 32.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 32.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 31.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 31.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 31.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 31.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 31.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 31.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 30.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 30.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 30.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 30.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 30.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 29.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 29.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 28.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 28.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 28.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 28.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 28.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 28.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 28.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 27.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 27.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 24.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 24.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 24.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 24.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 24.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 23.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 23.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 22.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 22.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 22.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 21.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 21.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 20.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 18.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 18.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 18.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 17.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 13.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 12.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 17.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 17.7
FF:10151-102I7 76 years, female 17.7

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