MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.6 nTPM
HPA:83.6 nTPM
GTEx:45.5 nTPM
FANTOM5:18.3 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.4
2828 Female, age 72, unknown 82.6
1870 Female, age 42, unknown 81.2
1827 Male, age 72, unknown 79.5
2411 Female, age 72, unknown 78.8
1830 Male, age 51, unknown 78.4
2666 Male, age 74, left hemisphere 78.0
1833 Male, age 53, unknown 77.4
2586 Male, age 75, left hemisphere 76.6
2019 Male, age 18, unknown 76.3
2219 Male, age 76, both hemispheres 74.9
Dorsal raphe nucleus
nTPM: 81.5
2298 Female, age 72, unknown 84.5
2016 Female, age 72, unknown 83.1
1828 Male, age 53, unknown 82.6
2047 Male, age 72, unknown 78.7
2750 Male, age 76, both hemispheres 78.5
Inferior colliculus
nTPM: 77.6
2097 Female, age 72, unknown 79.1
2849 Male, age 72, unknown 77.7
1848 Female, age 42, unknown 77.6
1890 Male, age 53, unknown 76.2
Median raphe nucleus
nTPM: 77.4
2220 Male, age 76, midline 77.4
Pedunculopontine tegmental nucleus
nTPM: 81.0
2338 Male, age 61, both hemispheres 86.5
2334 Male, age 80, both hemispheres 79.3
1921 Female, age 85, both hemispheres 77.3
Periaquaductal grey, anterior
nTPM: 80.7
1795 Male, age 51, unknown 82.5
1947 Male, age 18, unknown 80.2
2502 Female, age 75, unknown 79.3
Periaquaductal grey, dorsal
nTPM: 81.0
1831 Male, age 72, unknown 82.6
2850 Male, age 76, both hemispheres 81.6
1840 Male, age 53, unknown 81.2
2464 Female, age 72, unknown 78.7
Periaquaductal grey, lateral
nTPM: 83.6
2053 Male, age 18, unknown 86.7
2272 Male, age 74, both hemispheres 82.5
2140 Male, age 76, both hemispheres 81.5
Pretectal area
nTPM: 79.4
2273 Male, age 74, both hemispheres 85.6
2224 Female, age 72, unknown 83.5
2825 Male, age 18, unknown 81.6
1944 Female, age 72, unknown 79.6
2316 Male, age 76, right hemisphere 79.1
2667 Female, age 75, unknown 78.8
1815 Male, age 53, unknown 78.7
2407 Male, age 75, both hemispheres 77.3
1817 Female, age 42, unknown 76.9
1816 Male, age 51, unknown 76.7
2007 Male, age 72, unknown 75.8
Red nucleus
nTPM: 79.5
2725 Female, age 75, unknown 83.7
2503 Female, age 72, unknown 83.6
2823 Male, age 76, right hemisphere 81.3
1821 Female, age 72, unknown 79.6
1865 Male, age 51, unknown 79.6
1954 Female, age 42, unknown 79.6
2227 Male, age 72, unknown 79.5
2769 Male, age 72, unknown 79.1
2588 Male, age 74, left hemisphere 78.0
2785 Male, age 18, unknown 77.7
1904 Male, age 53, unknown 77.6
2584 Male, age 75, left hemisphere 74.4
Substantia nigra
nTPM: 79.8
2699 Male, age 18, unknown 86.1
1941 Male, age 53, unknown 81.2
2409 Female, age 72, unknown 81.1
2590 Female, age 75, unknown 81.0
1851 Male, age 51, unknown 80.3
1916 Female, age 42, unknown 78.8
2665 Male, age 74, both hemispheres 78.1
1889 Female, age 72, unknown 77.7
2241 Male, age 72, unknown 77.4
2583 Male, age 75, right hemisphere 76.0
Superior colliculus
nTPM: 80.5
1995 Male, age 72, unknown 87.8
1913 Female, age 42, unknown 85.9
1796 Male, age 53, unknown 81.5
1839 Male, age 51, unknown 80.8
2587 Male, age 74, left hemisphere 80.4
2087 Female, age 72, unknown 79.4
1895 Male, age 76, right hemisphere 78.8
2664 Male, age 75, both hemispheres 77.9
2668 Female, age 75, unknown 76.5
2261 Male, age 18, unknown 75.8
Ventral tegmental area
nTPM: 79.8
1915 Female, age 42, unknown 82.6
2021 Male, age 53, unknown 80.1
2223 Female, age 72, unknown 79.4
2218 Male, age 76, both hemispheres 79.1
2410 Female, age 72, unknown 79.1
1942 Male, age 51, unknown 78.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.5
Samples: 139

Max nTPM: 121.3
Min nTPM: 7.3
Std nTPM: 20.8
Median nTPM: 41.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 121.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 110.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 105.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 103.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 91.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 87.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 82.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 81.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 81.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 80.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.3
FF:10158-103A5 76 years, female 18.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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