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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:85.5 nTPM
HPA:85.5 nTPM
FANTOM5:11.7 Scaled Tags Per Million

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 85.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 79.5
2090 Male, age 80, both hemispheres 82.7
2301 Female, age 85, both hemispheres 80.6
2188 Female, age 91, both hemispheres 78.2
1984 Male, age 76, both hemispheres 76.3
Dorsal cochlear nucleus
nTPM: 78.1
2378 Male, age 80, both hemispheres 79.7
2370 Male, age 61, both hemispheres 79.4
2058 Male, age 76, both hemispheres 78.4
2187 Female, age 91, both hemispheres 77.4
2802 Male, age 74, right hemisphere 75.8
Dorsal tegmental nucleus
nTPM: 81.3
2358 Male, age 61, both hemispheres 90.9
1936 Male, age 76, left hemisphere 78.8
2083 Male, age 80, both hemispheres 78.6
2326 Male, age 74, both hemispheres 76.9
Dorsolateral tegmental area
nTPM: 81.5
2337 Male, age 61, both hemispheres 90.7
2654 Male, age 80, both hemispheres 80.8
2360 Male, age 74, both hemispheres 80.6
2141 Male, age 76, both hemispheres 78.1
2751 Female, age 85, both hemispheres 77.0
Kolliker-Fuse nucleus
nTPM: 80.3
2163 Male, age 80, both hemispheres 82.9
2315 Male, age 76, right hemisphere 80.8
2793 Female, age 91, left hemisphere 77.2
Lateral lemniscal nuclei
nTPM: 75.9
2746 Female, age 85, left hemisphere 77.7
2169 Male, age 76, both hemispheres 76.5
2320 Female, age 91, left hemisphere 75.4
2036 Male, age 80, both hemispheres 75.0
2453 Male, age 74, right hemisphere 74.6
Lateral parabrachial nucleus
nTPM: 81.5
2013 Male, age 80, both hemispheres 84.1
2792 Male, age 76, both hemispheres 81.3
2139 Female, age 85, right hemisphere 80.8
2790 Male, age 61, both hemispheres 79.6
Lateral vestibular nucleus
nTPM: 79.7
2311 Male, age 80, both hemispheres 81.8
2184 Male, age 76, both hemispheres 77.5
Locus coeruleus
nTPM: 78.0
2162 Male, age 80, both hemispheres 79.9
2317 Female, age 72, unknown 78.7
2123 Female, age 91, both hemispheres 78.3
2788 Male, age 74, unknown 78.1
1980 Male, age 76, both hemispheres 77.8
2720 Male, age 74, both hemispheres 76.7
2014 Male, age 55, unknown 76.3
Medial olivary nucleus
nTPM: 82.8
1943 Male, age 61, both hemispheres 84.5
1962 Male, age 76, both hemispheres 83.4
2851 Male, age 80, both hemispheres 82.3
2138 Female, age 91, both hemispheres 80.9
Medial parabrachial nucleus
nTPM: 78.1
2156 Male, age 61, both hemispheres 82.2
2854 Male, age 80, both hemispheres 77.8
2170 Female, age 91, both hemispheres 77.4
2786 Male, age 76, both hemispheres 77.3
2463 Female, age 85, right hemisphere 75.7
Medial periolivary nuclei
nTPM: 78.1
2791 Male, age 74, right hemisphere 82.7
2081 Male, age 80, both hemispheres 78.9
2063 Male, age 76, both hemispheres 76.8
2458 Female, age 91, both hemispheres 76.2
2171 Female, age 85, both hemispheres 75.8
Motor facial nucleus
nTPM: 77.0
2365 Male, age 74, right hemisphere 78.9
2126 Male, age 61, both hemispheres 78.5
2062 Male, age 76, both hemispheres 77.0
2795 Female, age 91, both hemispheres 76.3
2697 Female, age 85, both hemispheres 76.2
2327 Male, age 80, both hemispheres 74.8
Motor trigeminal nucleus
nTPM: 78.2
2335 Male, age 61, both hemispheres 82.5
2560 Male, age 74, both hemispheres 78.5
2309 Male, age 76, both hemispheres 77.7
2321 Female, age 91, both hemispheres 76.6
2079 Male, age 80, both hemispheres 75.5
Nuclei of the trapezoid body
nTPM: 76.1
1983 Male, age 76, both hemispheres 78.0
2166 Male, age 80, both hemispheres 76.9
2368 Female, age 91, both hemispheres 76.1
2735 Female, age 85, both hemispheres 74.8
2159 Male, age 61, both hemispheres 74.6
Paramedian reticular nucleus
nTPM: 77.8
2052 Male, age 76, both hemispheres 78.9
2057 Male, age 80, both hemispheres 78.8
2313 Male, age 61, both hemispheres 77.0
2050 Female, age 85, both hemispheres 76.6
Pontine nuclei
nTPM: 76.7
2115 Male, age 80, left hemisphere 79.2
1968 Male, age 76, left hemisphere 78.4
2454 Male, age 74, left hemisphere 77.2
2109 Female, age 72, unknown 77.0
2319 Female, age 91, both hemispheres 76.7
1863 Male, age 55, unknown 76.0
2787 Female, age 85, both hemispheres 74.8
2727 Male, age 61, right hemisphere 74.5
Pontine raphe nucleus
nTPM: 76.5
2853 Male, age 76, midline 77.4
2122 Female, age 85, midline 75.6
Posteroventral cochlear nucleus
nTPM: 79.8
2135 Female, age 91, both hemispheres 81.5
2070 Male, age 76, both hemispheres 81.4
2341 Male, age 80, both hemispheres 80.6
2371 Male, age 61, both hemispheres 78.2
2752 Female, age 85, both hemispheres 77.2
Principal sensory trigeminal nucleus
nTPM: 76.3
2324 Male, age 76, both hemispheres 77.5
2367 Female, age 91, left hemisphere 76.5
2158 Male, age 61, both hemispheres 75.7
2008 Male, age 80, left hemisphere 75.5
Reticular pontine nucleus, caudal
nTPM: 76.9
2092 Male, age 76, both hemispheres 79.8
2559 Male, age 74, both hemispheres 77.0
2457 Female, age 91, both hemispheres 76.0
2332 Male, age 80, right hemisphere 74.9
Reticular pontine nucleus, oral
nTPM: 77.7
1939 Male, age 80, both hemispheres 80.8
2167 Male, age 76, both hemispheres 79.3
2366 Female, age 91, both hemispheres 77.7
2012 Female, age 85, both hemispheres 75.7
2361 Male, age 74, both hemispheres 74.8
Reticulotegmental nucleus
nTPM: 76.9
2333 Male, age 80, both hemispheres 77.7
2325 Male, age 76, both hemispheres 77.3
2322 Female, age 91, both hemispheres 76.4
2452 Male, age 74, both hemispheres 76.0
Spinal trigeminal nucleus, oral
nTPM: 85.5
2737 Female, age 85, both hemispheres 100.2
1978 Male, age 76, both hemispheres 78.7
2164 Male, age 80, both hemispheres 77.7
Subcoeruleus area
nTPM: 77.8
2451 Male, age 74, both hemispheres 79.5
1958 Male, age 80, both hemispheres 78.4
2369 Female, age 85, left hemisphere 77.7
2323 Female, age 91, left hemisphere 77.2
2089 Male, age 76, left hemisphere 75.9
Superior olive
nTPM: 77.4
2364 Male, age 74, right hemisphere 81.6
2020 Male, age 76, both hemispheres 79.0
2561 Female, age 91, both hemispheres 75.6
1875 Female, age 85, both hemispheres 75.3
2329 Male, age 80, right hemisphere 75.2
Superior vestibular nucleus
nTPM: 82.5
2383 Male, age 74, both hemispheres 85.6
2015 Male, age 80, both hemispheres 81.3
2061 Male, age 76, both hemispheres 80.6
Ventral periolivary nuclei
nTPM: 76.8
2023 Male, age 76, both hemispheres 77.6
2130 Female, age 85, both hemispheres 77.0
2165 Male, age 80, both hemispheres 76.6
2794 Female, age 91, left hemisphere 76.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 78.4
2359 Male, age 61, both hemispheres 83.7
2449 Male, age 74, both hemispheres 78.7
2161 Male, age 80, both hemispheres 77.4
1959 Male, age 76, both hemispheres 77.2
2840 Female, age 85, both hemispheres 77.2
2456 Female, age 91, both hemispheres 76.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 11.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 11.7
FF:10165-103B3 76 years, female 16.0
FF:10182-103D2 60 years, female 7.4
Pons
Scaled Tags Per Million: 7.0
FF:10033-101E6 18-54 years, mixed 7.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.