BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.8 nTPM
HPA:83.8 nTPM
GTEx:48.1 nTPM
FANTOM5:18.8 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 83.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 83.8
2481 Female, age 94, left hemisphere 90.3
2289 Male, age 61, right hemisphere 86.7
1781 Male, age 74, unknown 84.6
1854 Male, age 80, left hemisphere 84.5
1857 Female, age 85, left hemisphere 83.2
2846 Female, age 79, unknown 80.9
2290 Female, age 72, unknown 80.6
2288 Male, age 75, left hemisphere 79.6
Claustrum
nTPM: 77.9
2292 Female, age 85, both hemispheres 81.2
2198 Male, age 80, both hemispheres 79.4
1956 Male, age 74, unknown 78.8
2392 Female, age 94, both hemispheres 78.7
2284 Female, age 91, both hemispheres 78.2
2491 Male, age 75, both hemispheres 77.4
2196 Female, age 79, unknown 77.2
2645 Female, age 72, unknown 76.5
2568 Male, age 61, both hemispheres 73.4
Globus pallidus, externus
nTPM: 81.9
1996 Male, age 80, right hemisphere 89.9
2772 Female, age 79, unknown 83.4
2395 Male, age 75, both hemispheres 78.9
2646 Male, age 61, right hemisphere 78.7
2567 Female, age 72, unknown 78.6
Globus pallidus, internus
nTPM: 83.3
2037 Male, age 80, right hemisphere 88.8
2483 Female, age 94, right hemisphere 84.6
2566 Female, age 72, unknown 83.9
1818 Male, age 74, unknown 83.7
2778 Female, age 91, both hemispheres 83.1
2111 Female, age 85, right hemisphere 80.4
2287 Male, age 75, right hemisphere 78.5
Nucleus accumbens
nTPM: 79.9
2732 Male, age 80, right hemisphere 82.5
2391 Female, age 94, left hemisphere 82.1
1856 Female, age 91, right hemisphere 80.9
1806 Female, age 85, left hemisphere 80.5
2286 Male, age 75, left hemisphere 79.9
2698 Female, age 72, unknown 79.8
1783 Male, age 74, unknown 77.7
2824 Male, age 61, right hemisphere 76.1
Nucleus basalis of Meynert
nTPM: 79.4
2393 Male, age 80, right hemisphere 83.0
2569 Male, age 61, both hemispheres 80.0
2484 Female, age 94, left hemisphere 79.7
2821 Male, age 75, both hemispheres 74.9
Nucleus of the diagonal band
nTPM: 80.9
2029 Male, age 61, right hemisphere 85.9
1812 Female, age 91, both hemispheres 81.5
1979 Male, age 74, unknown 80.7
2775 Male, age 80, right hemisphere 78.8
2195 Female, age 85, both hemispheres 77.4
Olfactory tubercle
nTPM: 82.7
2856 Male, age 75, right hemisphere 86.0
1846 Male, age 80, right hemisphere 84.1
2487 Female, age 94, left hemisphere 83.3
1998 Female, age 91, both hemispheres 77.6
Putamen
nTPM: 81.8
2482 Female, age 94, left hemisphere 95.7
2489 Female, age 72, unknown 82.3
1937 Female, age 91, right hemisphere 81.8
1829 Male, age 74, unknown 78.5
2466 Female, age 79, unknown 78.4
2647 Male, age 75, left hemisphere 78.1
1838 Male, age 80, right hemisphere 77.7
Septal nuclei
nTPM: 81.6
2394 Male, age 61, left hemisphere 84.9
2629 Female, age 94, right hemisphere 82.7
2199 Male, age 80, right hemisphere 82.6
2009 Female, age 91, both hemispheres 81.8
2059 Female, age 85, both hemispheres 81.1
2031 Female, age 72, unknown 79.3
1960 Male, age 74, unknown 78.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.1
Samples: 246

Max nTPM: 287.4
Min nTPM: 6.4
Std nTPM: 43.8
Median nTPM: 35.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 287.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 285.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 275.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 232.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 228.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 204.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 168.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 162.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 159.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 157.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 143.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.6
Samples: 246

Max nTPM: 205.4
Min nTPM: 6.9
Std nTPM: 27.2
Median nTPM: 27.8
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 205.4
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 156.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 151.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 127.3
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 126.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 117.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 110.0
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 106.7
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 104.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 101.2
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 94.7
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Brain - Putamen (basal ganglia)
Average nTPM: 44.4
Samples: 205

Max nTPM: 450.9
Min nTPM: 8.3
Std nTPM: 45.9
Median nTPM: 32.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 450.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 222.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 213.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 188.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 170.5
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 168.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 164.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 163.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 148.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 126.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 121.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.8
FF:10164-103B2 76 years, female 18.8
Globus pallidus
Scaled Tags Per Million: 16.0
FF:10175-103C4 60 years, female 17.3
FF:10161-103A8 76 years, female 14.6
Nucleus accumbens
Scaled Tags Per Million: 7.8
FF:10037-101F1 23-56 years, mixed 7.8
Putamen
Scaled Tags Per Million: 6.5
FF:10176-103C5 60 years, female 6.5

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