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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:174.4 nTPM
GTEx:174.4 nTPM
FANTOM5:1580.2 Scaled Tags Per Million
Pig:323.6 nTPM
Mouse:632.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 174.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 174.4
Samples: 105

Max nTPM: 443.6
Min nTPM: 55.4
Std nTPM: 105.5
Median nTPM:
142_1 61 years, female 443.6
17_1 71 years, male 421.7
162_1 79 years, female 407.2
139_1 64 years, female 400.8
137_1 83 years, male 399.2
89_1 63 years, male 383.1
149_1 88 years, male 377.5
4_1 88 years, female 375.7
42_1 85 years, male 370.5
120_1 70 years, female 356.2
119_1 70 years, female 352.0
109_1 81 years, female 347.4
2_1 77 years, female 343.2
145_1 84 years, male 341.4
35_1 74 years, female 337.4
126_1 63 years, male 335.2
32_1 67 years, male 331.6
43_1 64 years, female 330.6
153_1 70 years, female 320.9
18_1 88 years, male 305.1
81_1 67 years, male 299.6
117_1 61 years, male 290.0
9_1 66 years, female 276.3
6_1 73 years, female 250.2
491_1 89 years, female 246.9
115_1 83 years, male 246.3
99_1 64 years, male 238.5
315_1 62 years, female 234.5
217_1 76 years, male 209.1
501_1 88 years, male 200.7
518_1 75 years, female 194.6
506_1 65 years, male 192.4
314_1 67 years, male 178.9
495_1 57 years, female 175.8
490_1 67 years, female 174.2
322_1 76 years, male 173.5
503_1 68 years, male 166.2
517_1 88 years, male 161.8
356_1 87 years, female 159.2
320_1 89 years, female 158.0
291_1 76 years, male 150.7
288_1 66 years, female 150.1
293_1 68 years, female 146.3
41_1 94 years, female 144.9
354_1 81 years, female 144.1
351_1 91 years, male 143.8
466_1 57 years, female 138.5
348_1 84 years, male 134.7
311_1 78 years, male 130.9
316_1 62 years, male 130.9
251_1 78 years, male 130.2
243_1 75 years, male 129.9
353_1 82 years, female 129.8
415_1 77 years, female 129.4
468_1 89 years, male 129.2
295_1 61 years, female 126.6
292_1 71 years, male 125.6
313_1 79 years, female 124.2
499_1 55 years, female 123.4
526_1 61 years, male 121.6
324_1 76 years, male 121.5
319_1 81 years, male 119.3
335_1 73 years, female 118.8
307_1 66 years, female 115.5
254_1 77 years, female 113.8
452_1 88 years, female 113.7
352_1 62 years, male 112.9
349_1 83 years, male 111.3
350_1 84 years, female 110.7
266_1 85 years, male 109.2
308_1 70 years, female 107.3
265_1 87 years, male 105.5
480_1 63 years, male 104.6
413_1 59 years, female 103.8
377_1 82 years, female 101.5
447_1 81 years, male 100.9
406_1 79 years, male 100.2
318_1 68 years, male 98.2
264_1 73 years, female 97.4
386_1 76 years, male 97.0
396_1 62 years, male 94.9
384_1 83 years, male 93.6
286_1 68 years, female 90.6
173_1 67 years, male 90.4
375_1 74 years, female 89.8
355_1 70 years, female 88.4
389_1 86 years, female 87.3
317_1 60 years, male 86.3
414_1 84 years, female 85.7
347_1 72 years, male 85.5
321_1 62 years, female 84.0
405_1 91 years, male 81.0
379_1 60 years, male 79.9
237_1 82 years, male 78.0
376_1 75 years, female 76.1
394_1 75 years, female 74.7
163_1 78 years, male 74.6
189_1 76 years, male 70.5
218_1 71 years, female 69.8
172_1 72 years, female 69.7
246_1 77 years, male 65.3
404_1 82 years, female 62.2
177_1 74 years, male 60.0
425_1 59 years, female 59.0
229_1 69 years, female 55.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1580.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 1580.2
FF:10030-101E3 24-65 years, mixed 1580.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 323.6
Pig sample Sample description nTPM
Retina
nTPM: 323.7
Samples: 4

Max nTPM: 362.1
Min nTPM: 294.4
Sample A Female 294.4
Sample B Female 362.1
Sample C Male 330.9
Sample D Male 307.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 632.3
Mouse sample Sample description nTPM
Retina
nTPM: 632.3
Samples: 4

Max nTPM: 779.0
Min nTPM: 543.6
Sample A Male 601.3
Sample B Male 605.2
Sample C Female 779.0
Sample D Female 543.6

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by the Knut & Alice Wallenberg Foundation.