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TISSUE PRIMARY DATA WHITE MATTER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
WHITE MATTER - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:394.8 nTPM
HPA:394.8 nTPM
FANTOM5:1248.1 Scaled Tags Per Million
Pig:508.7 nTPM
Mouse:847.4 nTPM

WHITE MATTER - HPA Brain RNA-seq
Max nTPM 394.8
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 263.0
1920 Male, age 76, both hemispheres 263.0
Anterior funiculus (white matter)
nTPM: 366.5
2193 Male, age 75, both hemispheres 416.1
2819 Male, age 47, both hemispheres 396.0
2818 Female, age 79, both hemispheres 361.4
2734 Male, age 80, both hemispheres 292.6
Area striata (white matter)
nTPM: 284.8
2258 Female, age 91, left hemisphere 284.8
Cerebellar white matter
nTPM: 339.0
1931 Female, age 91, left hemisphere 359.6
2105 Male, age 74, right hemisphere 351.4
1837 Male, age 76, left hemisphere 341.3
1864 Male, age 80, left hemisphere 340.4
2773 Female, age 85, right hemisphere 331.7
2174 Male, age 61, right hemisphere 309.5
Corpus callosum, genu (white matter)
nTPM: 323.6
2771 Male, age 75, left hemisphere 366.6
1886 Female, age 67, right hemisphere 359.4
1885 Female, age 94, left hemisphere 320.7
1849 Female, age 91, right hemisphere 317.2
1887 Male, age 76, left hemisphere 291.7
1934 Male, age 61, right hemisphere 285.7
Corpus callosum, splenium (white matter)
nTPM: 319.0
2847 Female, age 67, right hemisphere 414.2
1946 Male, age 76, left hemisphere 307.8
2104 Male, age 75, left hemisphere 284.1
2238 Female, age 94, right hemisphere 269.8
Dorsal funiculus (white matter)
nTPM: 394.8
2810 Male, age 90, both hemispheres 411.1
2817 Male, age 47, both hemispheres 407.9
2128 Male, age 75, both hemispheres 394.6
2812 Male, age 66, both hemispheres 392.4
2064 Female, age 79, both hemispheres 367.9
Lateral funiculus (white matter)
nTPM: 374.6
2192 Male, age 75, both hemispheres 441.6
2094 Female, age 79, both hemispheres 373.7
2099 Male, age 90, both hemispheres 363.5
2294 Male, age 66, both hemispheres 319.6
Occipital cortex (white matter)
nTPM: 290.7
2259 Male, age 75, midline 320.3
2257 Female, age 67, both hemispheres 261.2
Parahippocampal cortex (white matter)
nTPM: 244.1
2157 Female, age 91, both hemispheres 244.1
Parieto-temporal junction (white matter)
nTPM: 304.9
1999 Female, age 67, right hemisphere 371.0
1935 Female, age 94, right hemisphere 310.0
2770 Female, age 91, right hemisphere 309.7
2774 Male, age 61, right hemisphere 291.3
2469 Male, age 75, right hemisphere 281.7
2121 Male, age 76, left hemisphere 265.8
Somatomor cortex, precentral gyrus (white matter)
nTPM: 221.0
2439 Male, age 75, right hemisphere 221.0
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 250.6
2623 Male, age 75, right hemisphere 250.6
Temporal white matter
nTPM: 257.9
2736 Female, age 91, right hemisphere 354.2
1801 Male, age 76, left hemisphere 267.0
2254 Male, age 75, right hemisphere 228.9
2523 Female, age 94, left hemisphere 220.4
2524 Female, age 85, left hemisphere 219.1

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1248.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 1248.1
FF:10042-101F6 24-68 years, mixed 1248.1

WHITE MATTER - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 508.7
Pig sample Sample description nTPM
Corpus callosum
nTPM: 508.8
Samples: 4

Max nTPM: 581.6
Min nTPM: 442.3
Sample A Female 442.3
Sample B Female 581.6
Sample C Male 505.2
Sample D Male 506.0

WHITE MATTER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 847.4
Mouse sample Sample description nTPM
Corpus callosum
nTPM: 847.4
Samples: 3

Max nTPM: 906.5
Min nTPM: 812.1
Sample A Male 823.6
Sample B Male 906.5
Sample D Female 812.1

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by the Knut & Alice Wallenberg Foundation.