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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:287.4 nTPM
HPA:287.4 nTPM
GTEx:217.5 nTPM
FANTOM5:1772.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA029292Antibody HPA071992
Glandular cells MediumHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 287.4
overview
Male, age 65
Small intestine sample 232
nTPM: 323.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 255.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 274.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 296.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 217.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 217.5
Samples: 187

Max nTPM: 402.1
Min nTPM: 102.6
Std nTPM: 56.9
Median nTPM: 211.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 402.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 368.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 353.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 352.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 349.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 337.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 326.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 326.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 322.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 320.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 319.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 318.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 316.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 315.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 312.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 311.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 311.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 310.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 309.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 306.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 298.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 297.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 294.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 288.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 287.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 284.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 284.3
GTEX-1192X-2526-SM-59868 50-59 years, male 280.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 279.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 279.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 277.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 277.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 268.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 265.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 265.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 265.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 263.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 263.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 262.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 261.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 261.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 260.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 259.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 258.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 256.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 255.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 253.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 249.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 248.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 248.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 246.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 246.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 245.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 244.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 242.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 242.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 241.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 240.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 239.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 238.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 238.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 235.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 235.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 234.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 232.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 231.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 231.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 230.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 230.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 228.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 228.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 227.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 227.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 226.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 226.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 225.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 224.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 223.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 221.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 220.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 219.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 218.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 218.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 217.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 217.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 217.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 217.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 215.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 214.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 213.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 213.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 213.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 213.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 211.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 210.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 209.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 209.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 208.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 207.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 205.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 205.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 204.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 203.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 201.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 200.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 200.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 200.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 200.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 199.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 199.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 198.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 197.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 194.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 193.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 191.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 190.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 190.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 188.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 188.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 187.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 185.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 184.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 184.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 183.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 181.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 180.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 180.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 179.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 178.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 178.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 178.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 177.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 177.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 175.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 174.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 174.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 174.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 174.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 173.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 172.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 171.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 170.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 169.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 169.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 169.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 169.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 168.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 168.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 167.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 167.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 167.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 166.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 165.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 165.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 165.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 162.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 160.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 160.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 158.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 157.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 155.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 155.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 155.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 155.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 154.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 154.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 154.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 153.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 152.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 151.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 149.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 149.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 148.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 147.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 147.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 146.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 145.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 144.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 141.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 134.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 134.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 133.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 133.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 132.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 129.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 112.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 102.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1772.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1772.6
FF:10024-101D6 15,40,85 years, mixed 1772.6

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