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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:413.0 nTPM
HPA:413.0 nTPM
GTEx:435.2 nTPM
FANTOM5:705.8 Scaled Tags Per Million
Pig:284.6 nTPM
Mouse:898.4 nTPM
Allen mouse:22.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 413.0
Sample id Sample description nTPM
Amygdala
nTPM: 391.3
2814 Male, age 76, right hemisphere 466.0
2514 Male, age 75, right hemisphere 392.2
2517 Female, age 94, left hemisphere 370.5
2695 Female, age 67, right hemisphere 368.0
1987 Female, age 91, left hemisphere 359.9
Basal amygdala
nTPM: 374.1
2110 Male, age 80, left hemisphere 421.9
2243 Female, age 91, right hemisphere 411.8
1955 Male, age 76, both hemispheres 397.3
2685 Female, age 94, left hemisphere 375.4
2609 Male, age 75, right hemisphere 322.9
2827 Female, age 67, right hemisphere 315.2
Central amygdala
nTPM: 371.7
1905 Male, age 76, both hemispheres 436.1
2239 Male, age 80, left hemisphere 399.3
2826 Female, age 94, left hemisphere 374.2
2701 Female, age 91, right hemisphere 331.1
2515 Male, age 75, right hemisphere 317.8
Corticomedial amygdala
nTPM: 370.1
2242 Female, age 91, right hemisphere 417.6
2829 Male, age 80, left hemisphere 405.6
2240 Male, age 76, both hemispheres 394.2
2429 Female, age 94, left hemisphere 373.1
2428 Male, age 75, right hemisphere 316.4
2535 Female, age 67, right hemisphere 313.8
Lateral amygdala
nTPM: 368.5
1883 Male, age 76, both hemispheres 448.8
2534 Female, age 94, left hemisphere 401.2
2516 Male, age 75, right hemisphere 381.5
2830 Female, age 67, right hemisphere 353.8
2255 Female, age 91, right hemisphere 320.9
2256 Male, age 80, left hemisphere 304.9
Stria terminalis, bed nucleus
nTPM: 413.0
1974 Female, age 91, both hemispheres 460.7
2486 Female, age 94, both hemispheres 439.9
2201 Male, age 74, unknown 338.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 435.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 435.2
Samples: 152

Max nTPM: 807.3
Min nTPM: 248.3
Std nTPM: 107.3
Median nTPM: 426.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 807.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 762.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 755.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 737.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 729.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 658.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 654.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 635.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 634.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 630.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 627.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 616.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 590.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 582.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 576.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 558.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 556.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 555.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 553.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 548.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 547.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 545.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 544.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 544.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 538.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 528.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 524.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 519.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 508.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 504.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 503.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 499.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 497.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 496.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 492.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 483.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 480.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 478.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 474.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 474.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 473.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 472.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 471.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 471.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 469.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 467.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 466.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 464.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 464.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 463.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 462.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 461.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 460.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 460.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 459.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 456.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 456.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 453.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 451.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 451.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 448.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 447.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 445.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 445.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 443.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 443.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 440.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 439.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 437.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 432.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 432.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 431.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 431.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 429.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 429.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 426.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 425.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 420.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 419.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 418.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 417.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 417.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 416.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 412.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 411.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 410.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 409.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 409.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 404.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 402.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 401.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 398.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 395.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 395.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 390.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 390.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 389.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 389.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 388.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 382.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 381.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 381.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 380.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 379.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 377.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 377.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 375.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 369.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 367.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 364.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 364.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 361.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 360.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 359.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 359.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 354.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 354.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 353.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 352.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 351.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 348.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 347.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 347.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 343.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 343.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 340.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 339.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 334.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 333.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 332.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 330.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 326.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 325.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 321.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 320.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 318.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 317.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 314.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 307.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 299.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 298.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 295.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 292.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 291.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 289.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 283.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 264.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 260.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 258.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 254.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 252.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 248.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 705.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 705.8
FF:10151-102I7 76 years, female 705.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 284.6
Pig sample Sample description nTPM
Amygdala
nTPM: 284.6
Samples: 4

Max nTPM: 384.7
Min nTPM: 234.3
Sample A Female 384.7
Sample B Female 234.3
Sample C Male 247.2
Sample D Male 272.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 898.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 898.4
Samples: 4

Max nTPM: 985.9
Min nTPM: 827.0
Sample A Male 985.9
Sample B Male 827.0
Sample C Female 894.8
Sample D Female 885.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 22.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.3
79591705 Antisense, RP_071218_02_B09, Mouse strain C57BL/6J (56 days, male) 37.0
106 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 29.8
107 Antisense, RP_Baylor_253875, Mouse strain C57BL/6J (56 days, male) 25.8
70611467 Antisense, RP_050630_03_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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