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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:209.3 nTPM
GTEx:209.3 nTPM
FANTOM5:611.7 Scaled Tags Per Million
Pig:95.0 nTPM
Mouse:296.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 209.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 209.3
Samples: 105

Max nTPM: 347.4
Min nTPM: 143.7
Std nTPM: 38.0
Median nTPM:
173_1 67 years, male 347.4
452_1 88 years, female 337.4
506_1 65 years, male 295.9
237_1 82 years, male 279.9
322_1 76 years, male 273.2
384_1 83 years, male 270.3
218_1 71 years, female 268.5
139_1 64 years, female 268.2
379_1 60 years, male 266.6
41_1 94 years, female 266.5
295_1 61 years, female 261.1
145_1 84 years, male 255.8
501_1 88 years, male 251.9
314_1 67 years, male 248.2
316_1 62 years, male 244.0
321_1 62 years, female 241.0
447_1 81 years, male 240.9
120_1 70 years, female 239.2
413_1 59 years, female 238.7
288_1 66 years, female 238.6
137_1 83 years, male 238.4
317_1 60 years, male 238.0
377_1 82 years, female 237.2
351_1 91 years, male 236.1
264_1 73 years, female 234.6
42_1 85 years, male 233.3
353_1 82 years, female 233.3
177_1 74 years, male 233.0
375_1 74 years, female 232.2
396_1 62 years, male 232.0
4_1 88 years, female 231.1
17_1 71 years, male 229.8
119_1 70 years, female 227.7
348_1 84 years, male 227.7
243_1 75 years, male 226.1
35_1 74 years, female 225.9
311_1 78 years, male 225.2
99_1 64 years, male 224.8
109_1 81 years, female 219.0
347_1 72 years, male 218.9
386_1 76 years, male 215.9
315_1 62 years, female 211.9
349_1 83 years, male 210.4
495_1 57 years, female 209.0
172_1 72 years, female 208.6
286_1 68 years, female 208.6
324_1 76 years, male 206.7
291_1 76 years, male 206.4
320_1 89 years, female 204.9
43_1 64 years, female 203.6
6_1 73 years, female 203.5
356_1 87 years, female 203.1
318_1 68 years, male 202.6
406_1 79 years, male 202.6
115_1 83 years, male 202.3
376_1 75 years, female 202.1
142_1 61 years, female 200.9
254_1 77 years, female 200.8
18_1 88 years, male 200.4
480_1 63 years, male 200.0
89_1 63 years, male 199.4
293_1 68 years, female 198.1
491_1 89 years, female 198.0
2_1 77 years, female 196.7
189_1 76 years, male 196.2
163_1 78 years, male 196.0
518_1 75 years, female 196.0
307_1 66 years, female 195.5
308_1 70 years, female 195.1
81_1 67 years, male 190.7
229_1 69 years, female 187.9
313_1 79 years, female 187.9
425_1 59 years, female 186.1
394_1 75 years, female 185.0
404_1 82 years, female 184.3
354_1 81 years, female 183.2
319_1 81 years, male 181.8
503_1 68 years, male 181.3
335_1 73 years, female 181.2
265_1 87 years, male 180.6
405_1 91 years, male 177.7
526_1 61 years, male 176.5
117_1 61 years, male 176.2
468_1 89 years, male 172.4
352_1 62 years, male 172.1
246_1 77 years, male 171.7
266_1 85 years, male 170.8
251_1 78 years, male 169.2
292_1 71 years, male 168.9
350_1 84 years, female 168.8
414_1 84 years, female 168.8
126_1 63 years, male 168.0
355_1 70 years, female 166.2
499_1 55 years, female 166.2
9_1 66 years, female 164.0
517_1 88 years, male 163.9
162_1 79 years, female 163.7
217_1 76 years, male 163.6
490_1 67 years, female 163.1
389_1 86 years, female 159.2
415_1 77 years, female 157.5
149_1 88 years, male 155.6
153_1 70 years, female 154.0
32_1 67 years, male 149.6
466_1 57 years, female 143.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 611.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 611.7
FF:10030-101E3 24-65 years, mixed 611.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.0
Pig sample Sample description nTPM
Retina
nTPM: 95.0
Samples: 4

Max nTPM: 109.1
Min nTPM: 87.8
Sample A Female 91.8
Sample B Female 109.1
Sample C Male 91.3
Sample D Male 87.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 296.7
Mouse sample Sample description nTPM
Retina
nTPM: 296.8
Samples: 4

Max nTPM: 316.5
Min nTPM: 274.4
Sample A Male 316.5
Sample B Male 274.4
Sample C Female 296.9
Sample D Female 299.2

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