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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:1190.2 nTPM
GTEx:1126.9 nTPM
FANTOM5:1617.3 Scaled Tags Per Million
Pig:2.3 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 1190.2
Sample id Sample description nTPM
Putamen
nTPM: 1190.2
2466 Female, age 79, unknown 1288.0
1829 Male, age 74, unknown 1266.4
1838 Male, age 80, right hemisphere 1226.9
1937 Female, age 91, right hemisphere 1225.0
2482 Female, age 94, left hemisphere 1197.2
2647 Male, age 75, left hemisphere 1081.4
2489 Female, age 72, unknown 1046.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1126.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 1126.9
Samples: 205

Max nTPM: 2786.3
Min nTPM: 515.6
Std nTPM: 374.5
Median nTPM: 1060.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 2786.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 2404.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 2281.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 2139.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 2036.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 2024.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 1819.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 1810.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 1795.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 1794.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1786.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1747.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 1736.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1712.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 1698.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 1677.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 1661.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 1658.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1650.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1643.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1631.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 1625.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1611.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 1607.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1605.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 1569.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1567.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 1564.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 1515.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1512.8
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 1482.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 1481.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 1480.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1479.9
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1477.0
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1472.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 1468.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 1462.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 1459.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 1456.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 1455.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 1432.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 1421.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1418.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1417.5
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1411.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 1403.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1397.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 1387.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1382.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1378.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 1366.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1361.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 1360.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 1354.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1345.4
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 1327.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 1319.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1307.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1300.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 1297.4
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 1294.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 1291.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 1286.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 1285.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 1269.5
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 1253.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 1246.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 1246.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 1238.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1234.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1214.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 1200.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 1199.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1194.7
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 1191.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 1185.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1177.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 1176.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1171.9
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 1171.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 1163.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 1162.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 1158.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1144.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1143.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 1126.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 1105.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 1103.8
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 1103.5
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 1103.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1097.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 1092.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1087.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 1084.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 1082.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 1080.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 1076.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1075.4
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1070.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1068.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 1061.4
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1060.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 1059.7
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 1059.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1052.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 1048.8
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 1045.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 1042.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 1024.2
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 1020.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 1015.2
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 1012.8
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1012.7
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 986.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 983.2
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 982.5
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 979.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 976.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 975.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 970.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 965.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 959.1
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 951.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 949.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 946.6
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 937.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 934.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 933.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 927.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 921.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 910.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 908.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 907.6
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 906.6
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 898.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 895.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 894.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 894.6
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 892.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 883.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 881.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 867.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 865.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 858.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 856.0
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 844.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 841.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 839.3
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 838.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 837.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 835.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 835.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 830.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 830.2
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 828.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 827.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 821.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 820.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 816.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 807.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 806.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 806.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 803.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 802.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 799.8
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 794.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 786.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 782.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 778.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 769.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 766.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 766.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 765.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 759.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 756.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 756.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 751.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 744.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 740.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 735.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 734.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 728.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 726.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 722.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 715.5
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 714.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 711.0
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 710.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 708.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 704.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 703.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 698.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 694.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 688.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 673.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 670.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 664.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 634.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 617.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 609.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 601.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 588.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 521.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 515.6
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1617.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 1617.3
FF:10176-103C5 60 years, female 1617.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2.3
Pig sample Sample description nTPM
Putamen
nTPM: 2.3
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.7
Sample A Female 2.1
Sample B Female 2.9
Sample C Male 1.7
Sample D Male 2.3

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