We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CALM2
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CALM2
BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:1134.7 nTPM
GTEx:1151.3 nTPM
FANTOM5:1165.0 Scaled Tags Per Million
Pig:1.6 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 1134.7
Sample id Sample description nTPM
Substantia nigra
nTPM: 1134.7
1889 Female, age 72, unknown 1230.5
2241 Male, age 72, unknown 1183.5
2590 Female, age 75, unknown 1154.6
1941 Male, age 53, unknown 1143.4
1851 Male, age 51, unknown 1136.7
1916 Female, age 42, unknown 1134.9
2409 Female, age 72, unknown 1127.5
2583 Male, age 75, right hemisphere 1116.4
2665 Male, age 74, both hemispheres 1090.0
2699 Male, age 18, unknown 1029.9

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1151.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1151.3
Samples: 139

Max nTPM: 1773.9
Min nTPM: 688.8
Std nTPM: 223.2
Median nTPM: 1110.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1773.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1768.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1744.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1719.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1669.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1630.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1600.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1598.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1536.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1533.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1529.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1506.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1497.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1474.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1469.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1460.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1454.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1428.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1413.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1404.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 1398.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1366.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1366.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1357.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1357.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1352.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1350.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1344.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 1335.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1321.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 1315.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1304.1
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 1288.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 1287.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1285.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 1275.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1255.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1254.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 1244.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1238.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1232.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1222.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1219.4
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 1216.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 1214.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 1209.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1198.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 1185.2
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 1184.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 1183.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1183.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1179.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1179.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1171.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 1170.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1165.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1164.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1161.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 1158.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 1147.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1147.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 1146.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 1144.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1139.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 1131.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1127.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1120.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 1113.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1112.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1110.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1105.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1101.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1098.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1096.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 1092.8
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 1092.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1087.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1079.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1079.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1078.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1074.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 1070.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 1069.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1062.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 1058.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 1056.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 1052.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 1050.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 1047.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1046.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 1037.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1031.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 1030.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1028.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1027.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1021.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1019.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 1009.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1009.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1007.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1001.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 999.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 997.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 994.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 990.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 990.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 989.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 982.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 981.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 980.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 980.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 973.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 971.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 966.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 966.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 965.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 964.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 960.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 956.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 949.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 937.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 929.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 927.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 916.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 910.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 909.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 903.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 888.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 879.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 846.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 832.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 821.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 820.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 818.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 815.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 802.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 795.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 752.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 688.8
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1165.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1165.0
FF:10158-103A5 76 years, female 1165.0

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.6
Samples: 4

Max nTPM: 2.5
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 1.5
Sample C Male 1.8
Sample D Male 2.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.