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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:305.5 nTPM
HPA:305.5 nTPM
FANTOM5:123.5 Scaled Tags Per Million
Pig:205.6 nTPM
Mouse:914.3 nTPM
Allen mouse:2.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 305.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 290.6
2032 Female, age 42, unknown 300.0
2396 Male, age 61, right hemisphere 285.9
2497 Male, age 66, unknown 285.8
Centromedial thalamic nucleus
nTPM: 290.7
2401 Male, age 76, right hemisphere 312.5
2279 Female, age 85, left hemisphere 268.9
Habenula
nTPM: 298.0
1957 Male, age 80, both hemispheres 316.4
2203 Male, age 61, left hemisphere 301.0
2252 Male, age 62, unknown 287.9
2276 Male, age 66, unknown 286.8
Lateral geniculate body
nTPM: 304.3
2106 Female, age 67, right hemisphere 326.2
1953 Male, age 62, unknown 320.0
2035 Female, age 72, unknown 313.5
2399 Male, age 61, left hemisphere 310.3
2575 Female, age 94, right hemisphere 296.7
2857 Male, age 74, right hemisphere 291.9
2841 Male, age 80, both hemispheres 288.2
2659 Male, age 66, unknown 287.5
Lateral thalamic nuclei
nTPM: 295.7
2765 Female, age 67, both hemispheres 311.2
2573 Female, age 94, left hemisphere 302.9
1903 Male, age 76, left hemisphere 296.4
2661 Female, age 72, unknown 284.7
2577 Male, age 74, both hemispheres 283.2
Medial dorsal thalamic nucleus
nTPM: 296.4
2572 Female, age 94, right hemisphere 315.2
1859 Male, age 76, both hemispheres 307.4
1971 Male, age 61, right hemisphere 304.8
1810 Male, age 48, unknown 299.7
2402 Female, age 67, both hemispheres 298.9
2026 Male, age 62, unknown 297.7
2498 Male, age 66, unknown 296.7
1930 Female, age 42, unknown 292.7
2283 Male, age 80, right hemisphere 292.2
2492 Male, age 75, right hemisphere 292.1
2576 Male, age 74, both hemispheres 292.1
2039 Female, age 72, unknown 286.1
2660 Female, age 72, unknown 278.2
Medial geniculate body
nTPM: 292.8
1811 Female, age 42, unknown 313.1
2650 Female, age 94, left hemisphere 305.3
2571 Male, age 75, right hemisphere 291.8
2657 Male, age 74, right hemisphere 289.8
2049 Male, age 76, both hemispheres 286.5
2207 Male, age 80, right hemisphere 284.6
2217 Female, age 72, unknown 278.5
Nucleus reuniens
nTPM: 289.1
2212 Female, age 67, left hemisphere 307.5
2205 Male, age 80, left hemisphere 284.1
2210 Female, age 85, left hemisphere 275.6
Nucleus rhomboideus
nTPM: 285.4
2206 Male, age 80, both hemispheres 298.6
2213 Female, age 67, left hemisphere 288.0
2280 Female, age 85, left hemisphere 269.5
Posterior thalamic nucleus
nTPM: 300.8
2649 Female, age 94, both hemispheres 331.2
2266 Male, age 76, right hemisphere 294.1
2495 Female, age 67, right hemisphere 290.6
2655 Male, age 74, right hemisphere 287.3
Pulvinar
nTPM: 298.7
1972 Male, age 62, unknown 315.3
1932 Male, age 80, right hemisphere 307.3
2398 Male, age 61, left hemisphere 304.8
2496 Female, age 67, right hemisphere 298.1
1899 Female, age 42, unknown 297.4
1929 Male, age 48, unknown 297.3
2499 Male, age 66, unknown 296.0
2214 Male, age 76, right hemisphere 295.5
2724 Male, age 74, right hemisphere 288.5
2582 Female, age 72, unknown 287.0
Subthalamic nucleus
nTPM: 289.2
2658 Male, age 74, both hemispheres 297.1
2275 Male, age 66, unknown 295.1
2124 Male, age 62, unknown 292.6
2406 Female, age 72, unknown 291.6
2282 Male, age 61, both hemispheres 289.5
2056 Female, age 72, unknown 289.1
2779 Female, age 42, unknown 283.9
2216 Male, age 48, unknown 275.1
Ventral posterolateral thalamic nucleus
nTPM: 295.5
2740 Male, age 76, right hemisphere 316.0
2197 Male, age 80, both hemispheres 300.2
2397 Male, age 61, right hemisphere 296.6
2570 Male, age 75, right hemisphere 294.1
2578 Male, age 74, both hemispheres 289.4
2581 Female, age 72, unknown 276.6
Ventral posteromedial thalamic nucleus
nTPM: 293.2
2202 Male, age 61, left hemisphere 310.1
2281 Male, age 75, right hemisphere 295.2
2758 Male, age 80, both hemispheres 290.2
2653 Male, age 74, both hemispheres 287.8
2127 Male, age 76, right hemisphere 283.0
Ventral thalamic nuclei
nTPM: 292.7
1845 Male, age 48, unknown 309.4
1860 Male, age 76, both hemispheres 306.3
2580 Male, age 66, unknown 293.9
2285 Male, age 62, unknown 293.3
1912 Female, age 42, unknown 292.8
2291 Female, age 72, unknown 288.2
2858 Female, age 72, unknown 286.6
2652 Male, age 74, left hemisphere 283.1
2204 Male, age 80, both hemispheres 280.3
Ventromedial nucleus
nTPM: 305.5
1982 Female, age 72, unknown 315.8
1822 Female, age 42, unknown 295.2
Zona incerta
nTPM: 291.0
2215 Male, age 66, unknown 312.3
2822 Male, age 74, right hemisphere 300.6
2208 Male, age 80, right hemisphere 284.4
2403 Male, age 62, unknown 282.1
2663 Female, age 72, unknown 275.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 123.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 123.5
FF:10154-103A1 76 years, female 123.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 205.6
Pig sample Sample description nTPM
Thalamus
nTPM: 205.6
Samples: 4

Max nTPM: 290.0
Min nTPM: 124.3
Sample A Female 290.0
Sample B Female 153.4
Sample C Male 254.7
Sample D Male 124.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 914.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 914.3
Samples: 4

Max nTPM: 1030.8
Min nTPM: 794.6
Sample A Male 963.5
Sample B Male 868.2
Sample C Female 1030.8
Sample D Female 794.6

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.6
69116709 Antisense, RP_050321_01_A05, Mouse strain C57BL/6J (56 days, male) 2.6

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