MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:297.7 nTPM
HPA:297.7 nTPM
GTEx:303.3 nTPM
FANTOM5:129.8 Scaled Tags Per Million
Pig:187.0 nTPM
Mouse:916.0 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 297.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 290.1
2019 Male, age 18, unknown 303.7
2411 Female, age 72, unknown 298.3
1827 Male, age 72, unknown 293.8
2219 Male, age 76, both hemispheres 291.5
1870 Female, age 42, unknown 290.8
2586 Male, age 75, left hemisphere 288.6
2666 Male, age 74, left hemisphere 286.1
1833 Male, age 53, unknown 285.0
1830 Male, age 51, unknown 282.1
2828 Female, age 72, unknown 281.2
Dorsal raphe nucleus
nTPM: 290.9
2298 Female, age 72, unknown 301.1
1828 Male, age 53, unknown 294.5
2047 Male, age 72, unknown 289.9
2750 Male, age 76, both hemispheres 289.4
2016 Female, age 72, unknown 279.8
Inferior colliculus
nTPM: 294.6
2097 Female, age 72, unknown 304.3
1848 Female, age 42, unknown 293.0
1890 Male, age 53, unknown 292.9
2849 Male, age 72, unknown 288.4
Median raphe nucleus
nTPM: 288.5
2220 Male, age 76, midline 288.5
Pedunculopontine tegmental nucleus
nTPM: 292.8
1921 Female, age 85, both hemispheres 296.2
2334 Male, age 80, both hemispheres 295.9
2338 Male, age 61, both hemispheres 286.2
Periaquaductal grey, anterior
nTPM: 290.1
1947 Male, age 18, unknown 291.7
1795 Male, age 51, unknown 289.8
2502 Female, age 75, unknown 288.7
Periaquaductal grey, dorsal
nTPM: 283.7
1840 Male, age 53, unknown 287.8
2464 Female, age 72, unknown 284.4
2850 Male, age 76, both hemispheres 281.6
1831 Male, age 72, unknown 280.9
Periaquaductal grey, lateral
nTPM: 281.5
2272 Male, age 74, both hemispheres 284.3
2053 Male, age 18, unknown 282.3
2140 Male, age 76, both hemispheres 278.0
Pretectal area
nTPM: 296.7
2007 Male, age 72, unknown 318.0
1816 Male, age 51, unknown 311.5
1817 Female, age 42, unknown 311.4
1944 Female, age 72, unknown 302.1
1815 Male, age 53, unknown 300.5
2667 Female, age 75, unknown 294.1
2224 Female, age 72, unknown 290.3
2273 Male, age 74, both hemispheres 284.2
2316 Male, age 76, right hemisphere 284.0
2407 Male, age 75, both hemispheres 283.8
2825 Male, age 18, unknown 283.6
Red nucleus
nTPM: 292.7
1821 Female, age 72, unknown 314.6
2725 Female, age 75, unknown 296.3
2785 Male, age 18, unknown 295.7
2588 Male, age 74, left hemisphere 293.4
2503 Female, age 72, unknown 292.3
1865 Male, age 51, unknown 291.3
2227 Male, age 72, unknown 289.6
2769 Male, age 72, unknown 288.5
2823 Male, age 76, right hemisphere 288.2
2584 Male, age 75, left hemisphere 288.0
1904 Male, age 53, unknown 287.7
1954 Female, age 42, unknown 286.6
Substantia nigra
nTPM: 297.7
1851 Male, age 51, unknown 305.9
1889 Female, age 72, unknown 304.4
1916 Female, age 42, unknown 302.6
2241 Male, age 72, unknown 300.6
1941 Male, age 53, unknown 299.6
2665 Male, age 74, both hemispheres 299.5
2409 Female, age 72, unknown 295.7
2590 Female, age 75, unknown 291.7
2699 Male, age 18, unknown 290.7
2583 Male, age 75, right hemisphere 286.0
Superior colliculus
nTPM: 289.7
1796 Male, age 53, unknown 296.6
1895 Male, age 76, right hemisphere 296.1
2087 Female, age 72, unknown 293.3
2668 Female, age 75, unknown 293.2
2261 Male, age 18, unknown 289.1
2587 Male, age 74, left hemisphere 288.5
2664 Male, age 75, both hemispheres 286.5
1839 Male, age 51, unknown 285.7
1913 Female, age 42, unknown 285.1
1995 Male, age 72, unknown 282.5
Ventral tegmental area
nTPM: 293.2
2410 Female, age 72, unknown 302.7
1915 Female, age 42, unknown 300.3
2223 Female, age 72, unknown 296.0
2218 Male, age 76, both hemispheres 291.1
1942 Male, age 51, unknown 286.9
2021 Male, age 53, unknown 282.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 303.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 303.3
Samples: 139

Max nTPM: 758.5
Min nTPM: 130.0
Std nTPM: 110.3
Median nTPM: 281.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 758.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 692.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 689.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 608.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 544.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 524.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 516.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 513.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 513.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 502.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 484.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.8
FF:10158-103A5 76 years, female 129.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 187.0
Pig sample Sample description nTPM
Midbrain
nTPM: 168.3
Samples: 4

Max nTPM: 191.4
Min nTPM: 126.3
Sample A Female 189.2
Sample B Female 166.4
Sample C Male 191.4
Sample D Male 126.3
Periaqueductal gray
nTPM: 110.4
Samples: 3

Max nTPM: 123.7
Min nTPM: 98.1
Sample B Female 123.7
Sample C Male 109.4
Sample D Male 98.1
Substantia nigra
nTPM: 161.2
Samples: 4

Max nTPM: 253.3
Min nTPM: 106.6
Sample A Female 253.3
Sample B Female 142.4
Sample C Male 142.4
Sample D Male 106.6
Superior colliculi
nTPM: 186.9
Samples: 4

Max nTPM: 230.2
Min nTPM: 130.2
Sample A Female 222.6
Sample B Female 164.7
Sample C Male 230.2
Sample D Male 130.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 916.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 916.0
Samples: 4

Max nTPM: 978.6
Min nTPM: 869.4
Sample A Male 933.8
Sample B Male 869.4
Sample C Female 882.3
Sample D Female 978.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69116709 Antisense, RP_050321_01_A05, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.