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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:304.6 nTPM
HPA:304.6 nTPM
GTEx:367.3 nTPM
FANTOM5:156.1 Scaled Tags Per Million
Pig:112.2 nTPM
Mouse:829.4 nTPM
Allen mouse:1.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 304.6
Sample id Sample description nTPM
Amygdala
nTPM: 299.6
2814 Male, age 76, right hemisphere 310.7
2514 Male, age 75, right hemisphere 304.9
1987 Female, age 91, left hemisphere 294.9
2695 Female, age 67, right hemisphere 294.4
2517 Female, age 94, left hemisphere 293.2
Basal amygdala
nTPM: 292.8
2609 Male, age 75, right hemisphere 295.7
2685 Female, age 94, left hemisphere 295.4
2243 Female, age 91, right hemisphere 294.5
1955 Male, age 76, both hemispheres 294.0
2110 Male, age 80, left hemisphere 294.0
2827 Female, age 67, right hemisphere 283.3
Central amygdala
nTPM: 296.9
1905 Male, age 76, both hemispheres 306.0
2515 Male, age 75, right hemisphere 297.7
2826 Female, age 94, left hemisphere 295.3
2701 Female, age 91, right hemisphere 293.1
2239 Male, age 80, left hemisphere 292.6
Corticomedial amygdala
nTPM: 297.6
2829 Male, age 80, left hemisphere 304.9
2429 Female, age 94, left hemisphere 303.6
2428 Male, age 75, right hemisphere 302.1
2240 Male, age 76, both hemispheres 295.5
2242 Female, age 91, right hemisphere 293.1
2535 Female, age 67, right hemisphere 286.4
Lateral amygdala
nTPM: 293.4
2516 Male, age 75, right hemisphere 308.9
1883 Male, age 76, both hemispheres 301.1
2534 Female, age 94, left hemisphere 296.3
2255 Female, age 91, right hemisphere 286.0
2830 Female, age 67, right hemisphere 285.9
2256 Male, age 80, left hemisphere 282.4
Stria terminalis, bed nucleus
nTPM: 304.6
1974 Female, age 91, both hemispheres 326.8
2486 Female, age 94, both hemispheres 299.9
2201 Male, age 74, unknown 287.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 367.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 367.3
Samples: 152

Max nTPM: 1603.1
Min nTPM: 85.0
Std nTPM: 167.4
Median nTPM: 333.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1603.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1016.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 944.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 943.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 686.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 671.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 660.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 604.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 583.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 564.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 556.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 538.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 530.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 529.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 509.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 509.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 509.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 505.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 505.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 494.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 489.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 482.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 462.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 460.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 447.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 447.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 445.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 444.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 443.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 441.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 432.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 431.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 427.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 422.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 417.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 416.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 414.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 412.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 410.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 407.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 405.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 404.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 402.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 400.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 385.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 384.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 378.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 376.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 370.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 369.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 368.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 367.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 366.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 366.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 363.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 363.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 361.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 360.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 359.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 358.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 357.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 357.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 355.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 349.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 349.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 348.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 347.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 345.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 345.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 344.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 339.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 338.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 336.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 336.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 335.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 334.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 333.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 333.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 330.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 329.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 326.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 324.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 324.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 323.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 322.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 318.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 318.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 318.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 318.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 318.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 318.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 316.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 315.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 311.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 310.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 308.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 308.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 306.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 305.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 303.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 302.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 299.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 295.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 295.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 294.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 292.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 292.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 290.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 288.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 287.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 282.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 281.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 280.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 277.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 274.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 273.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 271.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 270.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 262.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 261.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 254.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 253.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 252.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 252.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 251.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 248.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 248.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 247.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 246.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 244.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 243.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 243.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 236.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 235.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 235.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 234.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 232.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 232.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 232.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 230.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 229.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 229.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 225.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 225.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 218.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 216.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 214.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 204.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 185.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 183.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 178.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 85.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 156.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 156.1
FF:10151-102I7 76 years, female 156.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 112.2
Pig sample Sample description nTPM
Amygdala
nTPM: 112.2
Samples: 4

Max nTPM: 148.6
Min nTPM: 77.6
Sample A Female 148.6
Sample B Female 122.2
Sample C Male 100.3
Sample D Male 77.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 829.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 829.4
Samples: 4

Max nTPM: 923.6
Min nTPM: 754.0
Sample A Male 754.0
Sample B Male 771.8
Sample C Female 923.6
Sample D Female 868.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.9
69116709 Antisense, RP_050321_01_A05, Mouse strain C57BL/6J (56 days, male) 1.9

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