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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:169.9 nTPM
GTEx:169.9 nTPM
FANTOM5:101.3 Scaled Tags Per Million
Pig:68.6 nTPM
Mouse:1396.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 169.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 169.9
Samples: 105

Max nTPM: 238.6
Min nTPM: 118.2
Std nTPM: 26.2
Median nTPM:
142_1 61 years, female 238.6
162_1 79 years, female 224.1
414_1 84 years, female 219.3
375_1 74 years, female 218.9
396_1 62 years, male 217.6
153_1 70 years, female 217.0
35_1 74 years, female 215.2
120_1 70 years, female 208.3
466_1 57 years, female 207.7
501_1 88 years, male 207.6
265_1 87 years, male 207.1
315_1 62 years, female 203.5
119_1 70 years, female 201.0
415_1 77 years, female 198.3
347_1 72 years, male 198.2
413_1 59 years, female 196.6
126_1 63 years, male 195.9
229_1 69 years, female 195.8
377_1 82 years, female 195.7
115_1 83 years, male 195.3
246_1 77 years, male 194.6
313_1 79 years, female 194.6
139_1 64 years, female 193.8
17_1 71 years, male 193.7
324_1 76 years, male 193.5
379_1 60 years, male 190.6
499_1 55 years, female 187.7
89_1 63 years, male 187.6
81_1 67 years, male 186.9
18_1 88 years, male 186.0
491_1 89 years, female 184.9
99_1 64 years, male 184.6
42_1 85 years, male 183.8
6_1 73 years, female 183.7
145_1 84 years, male 183.2
404_1 82 years, female 181.8
447_1 81 years, male 180.1
32_1 67 years, male 180.0
254_1 77 years, female 178.9
322_1 76 years, male 178.6
243_1 75 years, male 177.7
117_1 61 years, male 177.0
4_1 88 years, female 175.1
266_1 85 years, male 175.0
490_1 67 years, female 174.6
386_1 76 years, male 172.8
384_1 83 years, male 172.3
468_1 89 years, male 171.9
389_1 86 years, female 170.9
526_1 61 years, male 169.8
394_1 75 years, female 169.7
2_1 77 years, female 169.5
217_1 76 years, male 169.1
319_1 81 years, male 169.1
43_1 64 years, female 168.8
189_1 76 years, male 167.4
321_1 62 years, female 166.8
237_1 82 years, male 165.3
109_1 81 years, female 164.2
425_1 59 years, female 164.0
9_1 66 years, female 163.2
518_1 75 years, female 162.7
352_1 62 years, male 162.6
355_1 70 years, female 162.4
307_1 66 years, female 161.8
495_1 57 years, female 161.6
149_1 88 years, male 161.3
376_1 75 years, female 161.1
452_1 88 years, female 159.2
480_1 63 years, male 159.0
506_1 65 years, male 155.4
264_1 73 years, female 154.5
288_1 66 years, female 154.0
316_1 62 years, male 152.8
173_1 67 years, male 152.0
503_1 68 years, male 150.8
354_1 81 years, female 150.6
177_1 74 years, male 149.3
286_1 68 years, female 148.1
311_1 78 years, male 147.9
335_1 73 years, female 147.9
405_1 91 years, male 147.3
348_1 84 years, male 146.7
350_1 84 years, female 145.8
295_1 61 years, female 143.8
137_1 83 years, male 141.6
406_1 79 years, male 141.3
517_1 88 years, male 141.3
218_1 71 years, female 140.9
308_1 70 years, female 140.6
41_1 94 years, female 139.6
251_1 78 years, male 136.3
314_1 67 years, male 135.2
320_1 89 years, female 135.1
349_1 83 years, male 135.0
318_1 68 years, male 133.6
172_1 72 years, female 133.2
163_1 78 years, male 132.7
317_1 60 years, male 132.0
291_1 76 years, male 131.0
353_1 82 years, female 130.0
351_1 91 years, male 128.5
292_1 71 years, male 124.6
356_1 87 years, female 121.6
293_1 68 years, female 118.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 101.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 101.3
FF:10030-101E3 24-65 years, mixed 101.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.6
Pig sample Sample description nTPM
Retina
nTPM: 68.6
Samples: 4

Max nTPM: 74.0
Min nTPM: 60.7
Sample A Female 72.2
Sample B Female 74.0
Sample C Male 67.4
Sample D Male 60.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1396.0
Mouse sample Sample description nTPM
Retina
nTPM: 1396.0
Samples: 4

Max nTPM: 1755.1
Min nTPM: 1193.2
Sample A Male 1415.4
Sample B Male 1193.2
Sample C Female 1755.1
Sample D Female 1220.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.