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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:210.3 nTPM
HPA:210.3 nTPM
GTEx:228.3 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:62.5 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 210.3
Sample id Sample description nTPM
Amygdala
nTPM: 208.4
2814 Male, age 76, right hemisphere 222.6
1987 Female, age 91, left hemisphere 208.1
2517 Female, age 94, left hemisphere 205.5
2695 Female, age 67, right hemisphere 202.9
2514 Male, age 75, right hemisphere 202.7
Basal amygdala
nTPM: 204.3
2243 Female, age 91, right hemisphere 208.9
2609 Male, age 75, right hemisphere 208.0
2685 Female, age 94, left hemisphere 207.0
2110 Male, age 80, left hemisphere 204.9
1955 Male, age 76, both hemispheres 204.6
2827 Female, age 67, right hemisphere 192.4
Central amygdala
nTPM: 207.9
2826 Female, age 94, left hemisphere 217.5
1905 Male, age 76, both hemispheres 214.2
2239 Male, age 80, left hemisphere 205.6
2515 Male, age 75, right hemisphere 203.3
2701 Female, age 91, right hemisphere 199.1
Corticomedial amygdala
nTPM: 208.2
2829 Male, age 80, left hemisphere 214.3
2242 Female, age 91, right hemisphere 214.0
2428 Male, age 75, right hemisphere 209.5
2429 Female, age 94, left hemisphere 207.6
2535 Female, age 67, right hemisphere 202.8
2240 Male, age 76, both hemispheres 200.9
Lateral amygdala
nTPM: 202.6
1883 Male, age 76, both hemispheres 218.3
2534 Female, age 94, left hemisphere 210.8
2516 Male, age 75, right hemisphere 203.6
2255 Female, age 91, right hemisphere 196.6
2256 Male, age 80, left hemisphere 194.8
2830 Female, age 67, right hemisphere 191.5
Stria terminalis, bed nucleus
nTPM: 210.3
1974 Female, age 91, both hemispheres 220.5
2486 Female, age 94, both hemispheres 206.8
2201 Male, age 74, unknown 203.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 228.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 228.3
Samples: 152

Max nTPM: 767.7
Min nTPM: 77.8
Std nTPM: 101.4
Median nTPM: 205.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 767.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 622.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 601.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 549.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 509.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 461.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 406.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 402.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 397.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 385.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 379.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 374.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 359.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 337.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 332.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 324.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 322.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 321.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 319.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 318.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 315.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 315.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 310.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 308.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 305.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 299.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 284.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 284.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 281.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 281.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 280.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 279.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 277.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 277.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 276.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 273.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 273.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 268.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 266.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 264.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 256.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 256.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 254.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 252.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 251.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 250.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 250.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 248.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 246.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 245.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 241.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 241.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 239.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 238.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 238.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 233.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 230.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 230.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 228.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 228.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 228.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 226.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 225.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 223.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 221.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 220.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 220.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 217.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 216.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 215.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 214.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 209.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 209.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 208.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 208.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 207.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 204.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 203.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 200.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 200.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 199.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 198.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 198.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 197.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 197.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 197.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 196.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 196.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 191.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 188.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 187.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 185.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 185.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 185.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 184.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 183.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 183.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 181.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 179.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 178.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 178.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 175.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 174.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 174.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 173.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 171.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 171.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 169.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 169.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 168.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 168.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 166.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 166.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 165.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 165.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 161.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 161.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 160.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 159.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 154.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 153.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 153.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 150.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 150.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 148.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 148.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 148.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 144.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 144.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 143.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 139.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 138.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 137.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 135.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 134.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 134.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 133.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 129.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 128.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 128.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 127.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 125.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 124.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 123.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 119.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 117.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 116.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 112.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 112.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 108.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 105.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 77.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 28.2
FF:10151-102I7 76 years, female 28.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 62.5
Pig sample Sample description nTPM
Amygdala
nTPM: 62.5
Samples: 4

Max nTPM: 85.5
Min nTPM: 48.9
Sample A Female 85.5
Sample B Female 48.9
Sample C Male 57.6
Sample D Male 57.9

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