MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:211.3 nTPM
HPA:211.3 nTPM
GTEx:184.4 nTPM
FANTOM5:14.7 Scaled Tags Per Million
Pig:149.5 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 211.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 206.5
2019 Male, age 18, unknown 219.7
2411 Female, age 72, unknown 210.7
1827 Male, age 72, unknown 210.5
1870 Female, age 42, unknown 207.4
2586 Male, age 75, left hemisphere 207.1
2219 Male, age 76, both hemispheres 204.1
2828 Female, age 72, unknown 203.4
1833 Male, age 53, unknown 203.1
1830 Male, age 51, unknown 202.2
2666 Male, age 74, left hemisphere 196.9
Dorsal raphe nucleus
nTPM: 206.2
2298 Female, age 72, unknown 214.7
2047 Male, age 72, unknown 208.5
1828 Male, age 53, unknown 207.9
2750 Male, age 76, both hemispheres 202.9
2016 Female, age 72, unknown 197.0
Inferior colliculus
nTPM: 208.8
2097 Female, age 72, unknown 214.0
1890 Male, age 53, unknown 211.8
1848 Female, age 42, unknown 207.0
2849 Male, age 72, unknown 202.5
Median raphe nucleus
nTPM: 202.8
2220 Male, age 76, midline 202.8
Pedunculopontine tegmental nucleus
nTPM: 208.5
1921 Female, age 85, both hemispheres 213.8
2334 Male, age 80, both hemispheres 208.7
2338 Male, age 61, both hemispheres 202.9
Periaquaductal grey, anterior
nTPM: 203.6
1947 Male, age 18, unknown 206.6
2502 Female, age 75, unknown 204.6
1795 Male, age 51, unknown 199.7
Periaquaductal grey, dorsal
nTPM: 200.4
1831 Male, age 72, unknown 201.7
1840 Male, age 53, unknown 201.1
2850 Male, age 76, both hemispheres 200.5
2464 Female, age 72, unknown 198.0
Periaquaductal grey, lateral
nTPM: 200.2
2272 Male, age 74, both hemispheres 204.6
2053 Male, age 18, unknown 199.6
2140 Male, age 76, both hemispheres 196.3
Pretectal area
nTPM: 211.3
2007 Male, age 72, unknown 226.5
1817 Female, age 42, unknown 219.4
1944 Female, age 72, unknown 219.1
1816 Male, age 51, unknown 216.2
2667 Female, age 75, unknown 211.3
1815 Male, age 53, unknown 209.9
2273 Male, age 74, both hemispheres 209.7
2224 Female, age 72, unknown 205.9
2407 Male, age 75, both hemispheres 204.3
2825 Male, age 18, unknown 202.1
2316 Male, age 76, right hemisphere 200.2
Red nucleus
nTPM: 207.7
1821 Female, age 72, unknown 219.3
2725 Female, age 75, unknown 212.3
2785 Male, age 18, unknown 212.1
1904 Male, age 53, unknown 209.1
1865 Male, age 51, unknown 208.2
2823 Male, age 76, right hemisphere 206.6
2769 Male, age 72, unknown 206.1
1954 Female, age 42, unknown 205.7
2503 Female, age 72, unknown 205.2
2227 Male, age 72, unknown 204.6
2584 Male, age 75, left hemisphere 203.2
2588 Male, age 74, left hemisphere 199.9
Substantia nigra
nTPM: 209.8
1889 Female, age 72, unknown 224.8
1916 Female, age 42, unknown 219.1
1941 Male, age 53, unknown 213.3
1851 Male, age 51, unknown 212.9
2409 Female, age 72, unknown 208.9
2665 Male, age 74, both hemispheres 207.2
2590 Female, age 75, unknown 207.1
2241 Male, age 72, unknown 202.1
2583 Male, age 75, right hemisphere 201.6
2699 Male, age 18, unknown 200.6
Superior colliculus
nTPM: 203.7
1895 Male, age 76, right hemisphere 214.2
2587 Male, age 74, left hemisphere 210.0
2087 Female, age 72, unknown 205.4
1796 Male, age 53, unknown 204.3
1839 Male, age 51, unknown 203.3
2261 Male, age 18, unknown 202.4
1913 Female, age 42, unknown 200.8
1995 Male, age 72, unknown 200.6
2668 Female, age 75, unknown 199.6
2664 Male, age 75, both hemispheres 196.9
Ventral tegmental area
nTPM: 205.4
1915 Female, age 42, unknown 211.4
2410 Female, age 72, unknown 211.4
2218 Male, age 76, both hemispheres 205.3
1942 Male, age 51, unknown 204.9
2223 Female, age 72, unknown 201.6
2021 Male, age 53, unknown 197.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 184.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 184.4
Samples: 139

Max nTPM: 389.4
Min nTPM: 81.1
Std nTPM: 51.6
Median nTPM: 177.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 389.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 318.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 317.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 311.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 305.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 298.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 297.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 296.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 290.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 289.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 277.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.7
FF:10158-103A5 76 years, female 14.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 149.5
Pig sample Sample description nTPM
Midbrain
nTPM: 127.9
Samples: 4

Max nTPM: 153.0
Min nTPM: 97.8
Sample A Female 129.8
Sample B Female 97.8
Sample C Male 153.0
Sample D Male 131.1
Periaqueductal gray
nTPM: 89.0
Samples: 3

Max nTPM: 98.4
Min nTPM: 84.1
Sample B Female 84.5
Sample C Male 98.4
Sample D Male 84.1
Substantia nigra
nTPM: 104.5
Samples: 4

Max nTPM: 151.2
Min nTPM: 68.9
Sample A Female 151.2
Sample B Female 68.9
Sample C Male 113.6
Sample D Male 84.2
Superior colliculi
nTPM: 149.5
Samples: 4

Max nTPM: 201.4
Min nTPM: 97.2
Sample A Female 172.7
Sample B Female 97.2
Sample C Male 201.4
Sample D Male 126.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.