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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:309.9 nTPM
HPA:309.9 nTPM
GTEx:885.6 nTPM
FANTOM5:1076.0 Scaled Tags Per Million
Pig:986.4 nTPM
Mouse:1001.1 nTPM
Allen mouse:2.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 309.9
Sample id Sample description nTPM
Amygdala
nTPM: 71.5
2814 Male, age 76, right hemisphere 194.1
1987 Female, age 91, left hemisphere 83.2
2517 Female, age 94, left hemisphere 80.5
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 211.9
2243 Female, age 91, right hemisphere 442.0
2685 Female, age 94, left hemisphere 316.3
2110 Male, age 80, left hemisphere 257.5
1955 Male, age 76, both hemispheres 129.0
2827 Female, age 67, right hemisphere 80.9
2609 Male, age 75, right hemisphere 45.5
Central amygdala
nTPM: 143.2
2239 Male, age 80, left hemisphere 240.6
2826 Female, age 94, left hemisphere 220.8
2701 Female, age 91, right hemisphere 130.7
1905 Male, age 76, both hemispheres 124.1
2515 Male, age 75, right hemisphere 0.0
Corticomedial amygdala
nTPM: 206.3
2242 Female, age 91, right hemisphere 386.4
2829 Male, age 80, left hemisphere 370.0
2535 Female, age 67, right hemisphere 181.9
2429 Female, age 94, left hemisphere 174.1
2240 Male, age 76, both hemispheres 125.3
2428 Male, age 75, right hemisphere 0.0
Lateral amygdala
nTPM: 127.2
2534 Female, age 94, left hemisphere 298.3
1883 Male, age 76, both hemispheres 190.7
2255 Female, age 91, right hemisphere 146.0
2256 Male, age 80, left hemisphere 128.6
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 309.9
1974 Female, age 91, both hemispheres 497.7
2486 Female, age 94, both hemispheres 403.5
2201 Male, age 74, unknown 28.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 885.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 885.6
Samples: 152

Max nTPM: 2831.7
Min nTPM: 197.1
Std nTPM: 489.3
Median nTPM: 750.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2831.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2770.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2386.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2129.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1969.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1932.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1925.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1807.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1758.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1693.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1650.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1639.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1619.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1582.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1566.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1522.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1520.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1482.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1468.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1445.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1439.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1424.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1422.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1374.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1343.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1335.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1287.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1263.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1261.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1257.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1236.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1200.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1191.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1161.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1160.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1141.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1138.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1130.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1128.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1107.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1092.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1087.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1077.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1076.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1074.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1066.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1063.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1044.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1038.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1036.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1027.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1021.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1019.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1016.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1014.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 999.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 985.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 977.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 970.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 969.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 933.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 911.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 877.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 855.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 825.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 820.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 804.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 803.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 794.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 778.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 774.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 768.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 763.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 761.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 761.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 750.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 750.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 744.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 736.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 727.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 724.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 714.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 703.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 699.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 685.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 680.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 677.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 651.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 641.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 640.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 634.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 633.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 633.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 625.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 615.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 612.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 608.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 601.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 595.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 591.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 590.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 586.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 583.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 582.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 582.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 576.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 564.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 558.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 557.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 551.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 548.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 544.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 541.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 532.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 521.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 520.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 510.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 510.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 509.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 501.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 500.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 498.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 495.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 495.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 495.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 463.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 458.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 449.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 440.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 430.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 427.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 415.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 412.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 398.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 396.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 393.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 387.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 374.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 367.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 361.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 349.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 345.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 344.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 344.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 341.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 330.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 326.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 304.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 290.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 260.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 260.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 197.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1076.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1076.0
FF:10151-102I7 76 years, female 1076.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 986.4
Pig sample Sample description nTPM
Amygdala
nTPM: 986.4
Samples: 4

Max nTPM: 1444.3
Min nTPM: 701.2
Sample A Female 1444.3
Sample B Female 701.2
Sample C Male 959.9
Sample D Male 840.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1001.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1001.1
Samples: 4

Max nTPM: 1112.7
Min nTPM: 937.2
Sample A Male 985.2
Sample B Male 969.2
Sample C Female 1112.7
Sample D Female 937.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.7
184 Antisense, RP_Baylor_102654, Mouse strain C57BL/6J (56 days, male) 2.7

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