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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:152.0 nTPM
GTEx:152.0 nTPM
FANTOM5:302.1 Scaled Tags Per Million
Pig:192.4 nTPM
Mouse:381.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 152.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 152.0
Samples: 105

Max nTPM: 251.0
Min nTPM: 54.9
Std nTPM: 40.5
Median nTPM:
452_1 88 years, female 251.0
177_1 74 years, male 241.3
321_1 62 years, female 234.5
377_1 82 years, female 229.1
243_1 75 years, male 228.2
172_1 72 years, female 216.7
386_1 76 years, male 214.5
229_1 69 years, female 212.4
506_1 65 years, male 211.0
163_1 78 years, male 210.9
404_1 82 years, female 208.7
379_1 60 years, male 199.8
447_1 81 years, male 197.8
173_1 67 years, male 196.8
353_1 82 years, female 196.8
376_1 75 years, female 195.4
322_1 76 years, male 193.8
335_1 73 years, female 192.3
316_1 62 years, male 189.3
425_1 59 years, female 186.1
288_1 66 years, female 185.2
295_1 61 years, female 183.6
320_1 89 years, female 181.3
292_1 71 years, male 181.1
396_1 62 years, male 180.9
251_1 78 years, male 178.9
348_1 84 years, male 177.1
291_1 76 years, male 176.6
317_1 60 years, male 174.9
324_1 76 years, male 170.9
318_1 68 years, male 170.0
351_1 91 years, male 169.1
349_1 83 years, male 168.8
6_1 73 years, female 167.7
517_1 88 years, male 167.0
293_1 68 years, female 165.8
352_1 62 years, male 165.7
189_1 76 years, male 165.4
480_1 63 years, male 164.9
254_1 77 years, female 164.3
17_1 71 years, male 162.7
406_1 79 years, male 161.5
350_1 84 years, female 161.2
264_1 73 years, female 160.7
319_1 81 years, male 159.8
347_1 72 years, male 159.5
354_1 81 years, female 156.6
115_1 83 years, male 155.9
413_1 59 years, female 154.2
518_1 75 years, female 151.9
265_1 87 years, male 150.9
468_1 89 years, male 149.7
355_1 70 years, female 149.0
2_1 77 years, female 148.4
120_1 70 years, female 148.4
145_1 84 years, male 147.7
526_1 61 years, male 147.7
356_1 87 years, female 146.9
237_1 82 years, male 146.6
18_1 88 years, male 145.8
286_1 68 years, female 145.2
315_1 62 years, female 144.7
375_1 74 years, female 144.7
246_1 77 years, male 144.4
99_1 64 years, male 144.3
313_1 79 years, female 141.6
41_1 94 years, female 141.5
405_1 91 years, male 141.3
218_1 71 years, female 139.6
314_1 67 years, male 139.5
384_1 83 years, male 139.2
109_1 81 years, female 137.5
4_1 88 years, female 135.0
503_1 68 years, male 134.0
9_1 66 years, female 133.1
499_1 55 years, female 132.7
153_1 70 years, female 130.8
266_1 85 years, male 130.1
394_1 75 years, female 129.8
139_1 64 years, female 128.7
142_1 61 years, female 128.7
126_1 63 years, male 128.3
81_1 67 years, male 125.1
311_1 78 years, male 121.8
137_1 83 years, male 120.0
501_1 88 years, male 117.7
389_1 86 years, female 115.2
117_1 61 years, male 113.7
217_1 76 years, male 113.2
35_1 74 years, female 110.2
162_1 79 years, female 106.9
307_1 66 years, female 106.9
43_1 64 years, female 106.5
466_1 57 years, female 104.4
42_1 85 years, male 98.7
32_1 67 years, male 93.3
119_1 70 years, female 93.3
415_1 77 years, female 90.4
149_1 88 years, male 83.0
414_1 84 years, female 82.6
89_1 63 years, male 69.7
495_1 57 years, female 64.4
490_1 67 years, female 63.5
491_1 89 years, female 56.1
308_1 70 years, female 54.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 302.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 302.1
FF:10030-101E3 24-65 years, mixed 302.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 192.4
Pig sample Sample description nTPM
Retina
nTPM: 192.4
Samples: 4

Max nTPM: 211.0
Min nTPM: 173.5
Sample A Female 180.6
Sample B Female 211.0
Sample C Male 204.5
Sample D Male 173.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 381.8
Mouse sample Sample description nTPM
Retina
nTPM: 381.8
Samples: 4

Max nTPM: 413.9
Min nTPM: 351.7
Sample A Male 409.1
Sample B Male 352.6
Sample C Female 413.9
Sample D Female 351.7

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by the Knut & Alice Wallenberg Foundation.