MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1054.2 nTPM
HPA:1054.2 nTPM
GTEx:2836.4 nTPM
FANTOM5:1405.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1054.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 937.2
1870 Female, age 42, unknown 1027.6
2411 Female, age 72, unknown 1021.0
2019 Male, age 18, unknown 1007.1
1830 Male, age 51, unknown 994.7
1833 Male, age 53, unknown 974.6
2828 Female, age 72, unknown 946.4
2666 Male, age 74, left hemisphere 861.0
1827 Male, age 72, unknown 852.6
2219 Male, age 76, both hemispheres 847.3
2586 Male, age 75, left hemisphere 839.2
Dorsal raphe nucleus
nTPM: 947.1
2750 Male, age 76, both hemispheres 1087.1
1828 Male, age 53, unknown 949.1
2016 Female, age 72, unknown 936.4
2298 Female, age 72, unknown 882.2
2047 Male, age 72, unknown 880.5
Inferior colliculus
nTPM: 872.3
1848 Female, age 42, unknown 891.4
1890 Male, age 53, unknown 881.4
2849 Male, age 72, unknown 859.7
2097 Female, age 72, unknown 856.7
Median raphe nucleus
nTPM: 1033.2
2220 Male, age 76, midline 1033.2
Pedunculopontine tegmental nucleus
nTPM: 995.4
2338 Male, age 61, both hemispheres 1056.7
2334 Male, age 80, both hemispheres 1013.3
1921 Female, age 85, both hemispheres 916.1
Periaquaductal grey, anterior
nTPM: 836.4
1795 Male, age 51, unknown 846.9
2502 Female, age 75, unknown 836.2
1947 Male, age 18, unknown 826.1
Periaquaductal grey, dorsal
nTPM: 896.0
1831 Male, age 72, unknown 950.8
2850 Male, age 76, both hemispheres 919.1
2464 Female, age 72, unknown 873.3
1840 Male, age 53, unknown 840.8
Periaquaductal grey, lateral
nTPM: 894.3
2053 Male, age 18, unknown 943.0
2272 Male, age 74, both hemispheres 877.1
2140 Male, age 76, both hemispheres 862.9
Pretectal area
nTPM: 880.7
2273 Male, age 74, both hemispheres 951.1
1815 Male, age 53, unknown 932.8
2316 Male, age 76, right hemisphere 897.9
1817 Female, age 42, unknown 897.4
2224 Female, age 72, unknown 887.0
2667 Female, age 75, unknown 886.5
2407 Male, age 75, both hemispheres 876.7
2825 Male, age 18, unknown 873.4
1944 Female, age 72, unknown 838.8
2007 Male, age 72, unknown 832.4
1816 Male, age 51, unknown 813.2
Red nucleus
nTPM: 1054.2
1821 Female, age 72, unknown 1171.8
1865 Male, age 51, unknown 1159.0
1904 Male, age 53, unknown 1120.7
1954 Female, age 42, unknown 1094.6
2503 Female, age 72, unknown 1091.7
2823 Male, age 76, right hemisphere 1091.7
2227 Male, age 72, unknown 1084.4
2769 Male, age 72, unknown 1084.1
2785 Male, age 18, unknown 1015.2
2588 Male, age 74, left hemisphere 943.6
2725 Female, age 75, unknown 916.0
2584 Male, age 75, left hemisphere 878.1
Substantia nigra
nTPM: 939.0
2699 Male, age 18, unknown 986.9
2409 Female, age 72, unknown 981.1
1851 Male, age 51, unknown 975.5
2590 Female, age 75, unknown 965.3
1889 Female, age 72, unknown 945.9
2665 Male, age 74, both hemispheres 924.1
1941 Male, age 53, unknown 905.9
2583 Male, age 75, right hemisphere 903.8
1916 Female, age 42, unknown 903.6
2241 Male, age 72, unknown 898.2
Superior colliculus
nTPM: 932.2
1995 Male, age 72, unknown 1111.8
1913 Female, age 42, unknown 1084.3
2668 Female, age 75, unknown 989.9
2587 Male, age 74, left hemisphere 989.5
1839 Male, age 51, unknown 876.9
2087 Female, age 72, unknown 874.7
1796 Male, age 53, unknown 872.8
2664 Male, age 75, both hemispheres 851.9
1895 Male, age 76, right hemisphere 851.7
2261 Male, age 18, unknown 818.6
Ventral tegmental area
nTPM: 1030.0
2223 Female, age 72, unknown 1275.0
2410 Female, age 72, unknown 1038.3
2218 Male, age 76, both hemispheres 980.4
2021 Male, age 53, unknown 977.9
1942 Male, age 51, unknown 961.4
1915 Female, age 42, unknown 947.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2836.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2836.4
Samples: 139

Max nTPM: 8807.2
Min nTPM: 568.9
Std nTPM: 1268.1
Median nTPM: 2625.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 8807.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 6485.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 5891.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 5772.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5526.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 5492.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 5434.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 5189.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 5180.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 5143.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 5099.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1405.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1405.4
FF:10158-103A5 76 years, female 1405.4

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The Human Protein Atlas

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