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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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42.574
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1359.0 nTPM
HPA:1359.0 nTPM
FANTOM5:1569.6 Scaled Tags Per Million

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody CAB000073
Pons mean intensity 42.574
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 21.787
Parabrachial nucleus 34.599
Principle sensory trigeminal nucleus 6.632
Locus coeruleus 42.574
Pontine nucleus -
Vestibular nucleus 6.754
Pontine reticular nucleus, oral 2.068
Lateral lemniscus -
Superior paraolivary nucleus 30.791

PONS - HPA Brain RNA-seq
Max nTPM 1359.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1176.6
2301 Female, age 85, both hemispheres 1399.1
2090 Male, age 80, both hemispheres 1174.1
2188 Female, age 91, both hemispheres 1120.2
1984 Male, age 76, both hemispheres 1013.2
Dorsal cochlear nucleus
nTPM: 1020.2
2187 Female, age 91, both hemispheres 1096.6
2378 Male, age 80, both hemispheres 1046.8
2802 Male, age 74, right hemisphere 1000.7
2370 Male, age 61, both hemispheres 993.0
2058 Male, age 76, both hemispheres 963.7
Dorsal tegmental nucleus
nTPM: 1009.7
2083 Male, age 80, both hemispheres 1078.3
2326 Male, age 74, both hemispheres 1037.3
1936 Male, age 76, left hemisphere 990.6
2358 Male, age 61, both hemispheres 932.6
Dorsolateral tegmental area
nTPM: 1053.2
2751 Female, age 85, both hemispheres 1251.2
2337 Male, age 61, both hemispheres 1114.4
2654 Male, age 80, both hemispheres 1096.6
2360 Male, age 74, both hemispheres 919.5
2141 Male, age 76, both hemispheres 884.3
Kolliker-Fuse nucleus
nTPM: 1175.5
2315 Male, age 76, right hemisphere 1412.5
2793 Female, age 91, left hemisphere 1072.6
2163 Male, age 80, both hemispheres 1041.5
Lateral lemniscal nuclei
nTPM: 935.7
2320 Female, age 91, left hemisphere 962.7
2746 Female, age 85, left hemisphere 960.2
2169 Male, age 76, both hemispheres 956.0
2453 Male, age 74, right hemisphere 900.7
2036 Male, age 80, both hemispheres 899.0
Lateral parabrachial nucleus
nTPM: 1121.6
2792 Male, age 76, both hemispheres 1460.0
2013 Male, age 80, both hemispheres 1079.4
2139 Female, age 85, right hemisphere 998.4
2790 Male, age 61, both hemispheres 948.4
Lateral vestibular nucleus
nTPM: 1135.3
2311 Male, age 80, both hemispheres 1263.8
2184 Male, age 76, both hemispheres 1006.8
Locus coeruleus
nTPM: 879.3
2720 Male, age 74, both hemispheres 946.0
2788 Male, age 74, unknown 897.1
2162 Male, age 80, both hemispheres 891.7
2123 Female, age 91, both hemispheres 879.4
2317 Female, age 72, unknown 864.1
2014 Male, age 55, unknown 848.3
1980 Male, age 76, both hemispheres 828.4
Medial olivary nucleus
nTPM: 1359.0
1962 Male, age 76, both hemispheres 1566.8
1943 Male, age 61, both hemispheres 1483.5
2851 Male, age 80, both hemispheres 1209.3
2138 Female, age 91, both hemispheres 1176.5
Medial parabrachial nucleus
nTPM: 1104.8
2170 Female, age 91, both hemispheres 1259.9
2854 Male, age 80, both hemispheres 1160.7
2463 Female, age 85, right hemisphere 1119.8
2156 Male, age 61, both hemispheres 1001.5
2786 Male, age 76, both hemispheres 982.3
Medial periolivary nuclei
nTPM: 983.2
2791 Male, age 74, right hemisphere 1045.4
2081 Male, age 80, both hemispheres 1023.2
2458 Female, age 91, both hemispheres 986.3
2063 Male, age 76, both hemispheres 981.1
2171 Female, age 85, both hemispheres 879.8
Motor facial nucleus
nTPM: 992.2
2126 Male, age 61, both hemispheres 1098.5
2697 Female, age 85, both hemispheres 1053.7
2365 Male, age 74, right hemisphere 1017.3
2795 Female, age 91, both hemispheres 966.2
2062 Male, age 76, both hemispheres 937.5
2327 Male, age 80, both hemispheres 880.0
Motor trigeminal nucleus
nTPM: 970.0
2335 Male, age 61, both hemispheres 988.4
2321 Female, age 91, both hemispheres 986.0
2560 Male, age 74, both hemispheres 980.6
2309 Male, age 76, both hemispheres 967.7
2079 Male, age 80, both hemispheres 927.1
Nuclei of the trapezoid body
nTPM: 956.6
2166 Male, age 80, both hemispheres 1044.3
1983 Male, age 76, both hemispheres 978.6
2159 Male, age 61, both hemispheres 973.5
2368 Female, age 91, both hemispheres 935.9
2735 Female, age 85, both hemispheres 850.4
Paramedian reticular nucleus
nTPM: 1066.9
2052 Male, age 76, both hemispheres 1266.0
2057 Male, age 80, both hemispheres 1046.8
2050 Female, age 85, both hemispheres 995.7
2313 Male, age 61, both hemispheres 959.2
Pontine nuclei
nTPM: 975.7
2454 Male, age 74, left hemisphere 1071.0
2109 Female, age 72, unknown 1051.5
2319 Female, age 91, both hemispheres 1049.7
2115 Male, age 80, left hemisphere 975.9
1968 Male, age 76, left hemisphere 969.1
1863 Male, age 55, unknown 956.4
2727 Male, age 61, right hemisphere 894.9
2787 Female, age 85, both hemispheres 837.2
Pontine raphe nucleus
nTPM: 902.1
2853 Male, age 76, midline 911.0
2122 Female, age 85, midline 893.1
Posteroventral cochlear nucleus
nTPM: 1109.0
2341 Male, age 80, both hemispheres 1412.0
2135 Female, age 91, both hemispheres 1151.8
2371 Male, age 61, both hemispheres 1066.2
2070 Male, age 76, both hemispheres 1000.4
2752 Female, age 85, both hemispheres 914.4
Principal sensory trigeminal nucleus
nTPM: 977.3
2367 Female, age 91, left hemisphere 1041.9
2324 Male, age 76, both hemispheres 1019.1
2158 Male, age 61, both hemispheres 940.1
2008 Male, age 80, left hemisphere 908.3
Reticular pontine nucleus, caudal
nTPM: 992.7
2092 Male, age 76, both hemispheres 1076.1
2559 Male, age 74, both hemispheres 1053.0
2457 Female, age 91, both hemispheres 987.5
2332 Male, age 80, right hemisphere 854.4
Reticular pontine nucleus, oral
nTPM: 1039.7
2361 Male, age 74, both hemispheres 1079.2
1939 Male, age 80, both hemispheres 1067.7
2366 Female, age 91, both hemispheres 1024.3
2012 Female, age 85, both hemispheres 1017.2
2167 Male, age 76, both hemispheres 1010.1
Reticulotegmental nucleus
nTPM: 964.4
2322 Female, age 91, both hemispheres 1020.0
2333 Male, age 80, both hemispheres 971.7
2452 Male, age 74, both hemispheres 944.7
2325 Male, age 76, both hemispheres 921.4
Spinal trigeminal nucleus, oral
nTPM: 952.6
2164 Male, age 80, both hemispheres 1008.5
2737 Female, age 85, both hemispheres 931.9
1978 Male, age 76, both hemispheres 917.2
Subcoeruleus area
nTPM: 1013.7
2369 Female, age 85, left hemisphere 1298.2
1958 Male, age 80, both hemispheres 1038.3
2089 Male, age 76, left hemisphere 947.7
2451 Male, age 74, both hemispheres 918.6
2323 Female, age 91, left hemisphere 865.6
Superior olive
nTPM: 1007.5
2020 Male, age 76, both hemispheres 1110.7
2364 Male, age 74, right hemisphere 1059.7
2329 Male, age 80, right hemisphere 1001.8
2561 Female, age 91, both hemispheres 940.1
1875 Female, age 85, both hemispheres 925.0
Superior vestibular nucleus
nTPM: 1102.0
2015 Male, age 80, both hemispheres 1139.2
2383 Male, age 74, both hemispheres 1094.3
2061 Male, age 76, both hemispheres 1072.5
Ventral periolivary nuclei
nTPM: 984.5
2023 Male, age 76, both hemispheres 1160.2
2165 Male, age 80, both hemispheres 955.9
2130 Female, age 85, both hemispheres 930.5
2794 Female, age 91, left hemisphere 891.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 996.6
1959 Male, age 76, both hemispheres 1068.3
2359 Male, age 61, both hemispheres 1037.3
2840 Female, age 85, both hemispheres 1004.2
2456 Female, age 91, both hemispheres 972.1
2161 Male, age 80, both hemispheres 969.9
2449 Male, age 74, both hemispheres 927.7

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1569.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1569.6
FF:10182-103D2 60 years, female 2047.2
FF:10165-103B3 76 years, female 1092.0
Pons
Scaled Tags Per Million: 1225.6
FF:10033-101E6 18-54 years, mixed 1225.6

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