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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1162.2 nTPM
HPA:1162.2 nTPM
GTEx:6098.8 nTPM
FANTOM5:2463.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1162.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1125.9
1981 Female, age 72, midline 1318.5
2048 Male, age 55, midline 1244.6
2816 Male, age 47, midline 1102.0
2194 Female, age 79, both hemispheres 994.9
2565 Male, age 75, midline 969.5
Cervical spinal cord, dorsal horn
nTPM: 1155.5
2296 Male, age 66, both hemispheres 1510.5
2173 Female, age 72, unknown 1457.5
2069 Male, age 47, both hemispheres 1133.2
1877 Male, age 55, unknown 1073.8
2721 Male, age 90, both hemispheres 931.2
2297 Male, age 75, both hemispheres 826.5
Cervical spinal cord, ventral horn
nTPM: 1162.2
2098 Female, age 72, unknown 1510.6
2295 Male, age 66, both hemispheres 1143.8
2809 Male, age 90, both hemispheres 1135.2
2480 Male, age 75, both hemispheres 1102.0
2068 Male, age 55, unknown 1081.0
2820 Female, age 79, both hemispheres 1000.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6098.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 6098.8
Samples: 159

Max nTPM: 12471.2
Min nTPM: 1500.6
Std nTPM: 2341.4
Median nTPM: 5932.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 12471.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 11926.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 11778.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 11562.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 11142.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 11022.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 10861.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 10381.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 10249.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 9929.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 9803.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 9782.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 9779.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 9569.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 9526.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 9429.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 9264.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 9185.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 9036.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 8907.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 8880.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 8879.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 8839.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 8734.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 8715.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 8597.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 8181.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 8126.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 8055.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 8018.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 7727.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 7689.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 7684.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 7681.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 7603.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 7546.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 7361.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 7360.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 7348.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 7322.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 7305.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 7301.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 7275.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 7273.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 7269.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 7242.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 7214.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 7209.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 7201.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 7195.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 7139.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 7120.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 7098.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 7055.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 6931.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 6925.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 6839.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 6838.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 6829.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 6787.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 6766.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 6761.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 6700.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 6691.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 6671.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 6628.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 6470.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 6458.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 6369.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 6367.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 6359.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 6260.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 6258.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 6205.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 6128.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 6103.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 6083.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 6042.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 6036.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 5932.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 5884.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 5842.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 5837.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 5833.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 5801.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 5796.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 5782.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 5713.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 5696.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 5671.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 5644.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 5635.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 5624.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 5559.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 5470.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 5461.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 5426.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 5384.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 5362.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 5345.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 5336.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 5151.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 5127.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 5099.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 5067.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 5055.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 5047.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 5032.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 4939.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 4927.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 4913.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 4866.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 4857.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 4846.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 4840.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 4804.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 4757.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 4677.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 4548.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 4544.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 4408.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 4358.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 4335.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 4283.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 4264.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 4236.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 4223.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 4139.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 3999.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3839.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 3809.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 3734.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 3713.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 3656.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 3565.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 3353.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 3311.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 3273.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 3248.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 3130.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 3080.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 3008.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 2958.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2901.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 2825.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2791.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2699.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2644.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 2532.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 2505.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2500.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 2453.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 2416.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2079.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2055.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1960.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1763.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1621.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1500.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2463.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2463.4
FF:10181-103D1 60 years, female 3374.2
FF:10159-103A6 76 years, female 1552.6

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