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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:178.3 nTPM
HPA:178.3 nTPM
GTEx:191.4 nTPM
FANTOM5:46.5 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 178.3
Sample id Sample description nTPM
Amygdala
nTPM: 176.7
2695 Female, age 67, right hemisphere 192.2
2514 Male, age 75, right hemisphere 176.5
2814 Male, age 76, right hemisphere 175.8
2517 Female, age 94, left hemisphere 171.6
1987 Female, age 91, left hemisphere 167.5
Basal amygdala
nTPM: 171.6
2827 Female, age 67, right hemisphere 177.1
2609 Male, age 75, right hemisphere 176.1
1955 Male, age 76, both hemispheres 172.8
2110 Male, age 80, left hemisphere 171.3
2685 Female, age 94, left hemisphere 166.9
2243 Female, age 91, right hemisphere 165.5
Central amygdala
nTPM: 176.0
2826 Female, age 94, left hemisphere 190.8
1905 Male, age 76, both hemispheres 179.8
2515 Male, age 75, right hemisphere 178.5
2239 Male, age 80, left hemisphere 166.6
2701 Female, age 91, right hemisphere 164.2
Corticomedial amygdala
nTPM: 169.0
2428 Male, age 75, right hemisphere 176.2
2429 Female, age 94, left hemisphere 168.2
2240 Male, age 76, both hemispheres 168.1
2535 Female, age 67, right hemisphere 168.1
2829 Male, age 80, left hemisphere 168.1
2242 Female, age 91, right hemisphere 165.1
Lateral amygdala
nTPM: 178.3
2516 Male, age 75, right hemisphere 189.1
2830 Female, age 67, right hemisphere 187.4
2534 Female, age 94, left hemisphere 187.1
1883 Male, age 76, both hemispheres 174.3
2256 Male, age 80, left hemisphere 167.1
2255 Female, age 91, right hemisphere 165.0
Stria terminalis, bed nucleus
nTPM: 163.7
1974 Female, age 91, both hemispheres 164.1
2201 Male, age 74, unknown 163.5
2486 Female, age 94, both hemispheres 163.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 191.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 191.4
Samples: 152

Max nTPM: 1785.8
Min nTPM: 38.5
Std nTPM: 191.3
Median nTPM: 138.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1785.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 932.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 755.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 705.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 595.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 563.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 539.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 483.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 482.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 467.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 433.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 410.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 394.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 386.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 375.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 356.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 355.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 351.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 325.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 320.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 320.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 286.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 286.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 279.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 277.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 253.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 246.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 246.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 235.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 229.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 226.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 226.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 224.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 221.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 220.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 218.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 216.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 215.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 214.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 211.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 209.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 208.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 206.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 200.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 197.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 191.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 188.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 188.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 183.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 181.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 178.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 176.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 175.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 175.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 175.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 170.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 169.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 169.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 168.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 168.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 167.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 167.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 166.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 164.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 163.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 156.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 153.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 151.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 150.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 147.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 143.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 142.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 142.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 141.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 139.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 139.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 138.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 135.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 135.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 133.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 132.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 132.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 131.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 130.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 128.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 128.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 128.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 124.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 123.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 122.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 122.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 122.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 121.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 120.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 120.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 119.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 116.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 113.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 108.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 107.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 106.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 105.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 102.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 101.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 101.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 101.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 100.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 100.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 99.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 99.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 97.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 95.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 95.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 94.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 92.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 92.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 91.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 90.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 90.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 88.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 85.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 85.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 85.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 85.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 84.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 83.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 83.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 83.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 82.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 81.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 79.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 75.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 74.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 71.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 70.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 68.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 68.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 67.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 66.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 64.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 62.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 62.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 59.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 59.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 56.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 48.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 47.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 44.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 44.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 43.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 42.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 38.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 46.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 46.5
FF:10151-102I7 76 years, female 46.5

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