MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:187.7 nTPM
HPA:187.7 nTPM
GTEx:243.7 nTPM
FANTOM5:59.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 187.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 170.7
2019 Male, age 18, unknown 183.2
2666 Male, age 74, left hemisphere 175.4
2828 Female, age 72, unknown 175.1
1870 Female, age 42, unknown 174.8
2411 Female, age 72, unknown 170.4
1833 Male, age 53, unknown 169.6
1830 Male, age 51, unknown 169.2
1827 Male, age 72, unknown 168.2
2219 Male, age 76, both hemispheres 162.8
2586 Male, age 75, left hemisphere 158.5
Dorsal raphe nucleus
nTPM: 174.3
1828 Male, age 53, unknown 179.7
2298 Female, age 72, unknown 175.9
2016 Female, age 72, unknown 174.4
2750 Male, age 76, both hemispheres 174.3
2047 Male, age 72, unknown 167.2
Inferior colliculus
nTPM: 172.3
2097 Female, age 72, unknown 178.4
1890 Male, age 53, unknown 173.6
1848 Female, age 42, unknown 170.0
2849 Male, age 72, unknown 167.0
Median raphe nucleus
nTPM: 172.4
2220 Male, age 76, midline 172.4
Pedunculopontine tegmental nucleus
nTPM: 184.4
2334 Male, age 80, both hemispheres 202.7
2338 Male, age 61, both hemispheres 176.9
1921 Female, age 85, both hemispheres 173.6
Periaquaductal grey, anterior
nTPM: 178.8
2502 Female, age 75, unknown 185.2
1795 Male, age 51, unknown 179.6
1947 Male, age 18, unknown 171.6
Periaquaductal grey, dorsal
nTPM: 177.8
2850 Male, age 76, both hemispheres 199.8
1831 Male, age 72, unknown 173.4
2464 Female, age 72, unknown 171.5
1840 Male, age 53, unknown 166.8
Periaquaductal grey, lateral
nTPM: 187.7
2272 Male, age 74, both hemispheres 198.9
2140 Male, age 76, both hemispheres 191.5
2053 Male, age 18, unknown 172.8
Pretectal area
nTPM: 173.8
2273 Male, age 74, both hemispheres 189.8
1817 Female, age 42, unknown 180.3
2316 Male, age 76, right hemisphere 177.7
2007 Male, age 72, unknown 176.1
2667 Female, age 75, unknown 174.8
1815 Male, age 53, unknown 172.4
2224 Female, age 72, unknown 170.8
1944 Female, age 72, unknown 170.4
1816 Male, age 51, unknown 170.0
2825 Male, age 18, unknown 169.8
2407 Male, age 75, both hemispheres 160.1
Red nucleus
nTPM: 176.7
1954 Female, age 42, unknown 188.7
1821 Female, age 72, unknown 183.4
1904 Male, age 53, unknown 179.1
2227 Male, age 72, unknown 179.0
2503 Female, age 72, unknown 178.9
2785 Male, age 18, unknown 178.4
2769 Male, age 72, unknown 177.5
2823 Male, age 76, right hemisphere 174.7
1865 Male, age 51, unknown 173.9
2588 Male, age 74, left hemisphere 173.6
2725 Female, age 75, unknown 169.6
2584 Male, age 75, left hemisphere 163.3
Substantia nigra
nTPM: 170.2
2665 Male, age 74, both hemispheres 184.6
1889 Female, age 72, unknown 172.7
1851 Male, age 51, unknown 171.7
1916 Female, age 42, unknown 171.7
2241 Male, age 72, unknown 171.3
2590 Female, age 75, unknown 169.5
2699 Male, age 18, unknown 166.8
2409 Female, age 72, unknown 166.5
1941 Male, age 53, unknown 165.7
2583 Male, age 75, right hemisphere 161.0
Superior colliculus
nTPM: 171.4
2587 Male, age 74, left hemisphere 184.0
2261 Male, age 18, unknown 175.0
1995 Male, age 72, unknown 174.1
2087 Female, age 72, unknown 173.6
1913 Female, age 42, unknown 171.1
1796 Male, age 53, unknown 170.1
1839 Male, age 51, unknown 170.1
1895 Male, age 76, right hemisphere 169.0
2668 Female, age 75, unknown 168.2
2664 Male, age 75, both hemispheres 159.4
Ventral tegmental area
nTPM: 171.5
2218 Male, age 76, both hemispheres 175.2
2021 Male, age 53, unknown 173.6
1915 Female, age 42, unknown 171.4
2223 Female, age 72, unknown 170.7
1942 Male, age 51, unknown 169.5
2410 Female, age 72, unknown 168.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 243.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 243.7
Samples: 139

Max nTPM: 978.4
Min nTPM: 72.3
Std nTPM: 150.9
Median nTPM: 204.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 978.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 960.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 636.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 633.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 619.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 595.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 588.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 538.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 533.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 477.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 472.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.9
FF:10158-103A5 76 years, female 59.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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