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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:194.9 nTPM
HPA:194.9 nTPM
GTEx:226.1 nTPM
FANTOM5:58.2 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 194.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 180.4
1981 Female, age 72, midline 198.5
2565 Male, age 75, midline 184.4
2816 Male, age 47, midline 179.0
2048 Male, age 55, midline 171.2
2194 Female, age 79, both hemispheres 169.0
Cervical spinal cord, dorsal horn
nTPM: 186.3
2297 Male, age 75, both hemispheres 211.0
2069 Male, age 47, both hemispheres 193.7
1877 Male, age 55, unknown 186.8
2296 Male, age 66, both hemispheres 180.5
2721 Male, age 90, both hemispheres 174.5
2173 Female, age 72, unknown 171.6
Cervical spinal cord, ventral horn
nTPM: 194.9
2098 Female, age 72, unknown 238.5
2809 Male, age 90, both hemispheres 211.9
2480 Male, age 75, both hemispheres 205.3
2068 Male, age 55, unknown 174.4
2295 Male, age 66, both hemispheres 174.4
2820 Female, age 79, both hemispheres 165.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 226.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 226.1
Samples: 159

Max nTPM: 782.2
Min nTPM: 59.1
Std nTPM: 127.4
Median nTPM: 188.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 782.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 698.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 641.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 586.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 569.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 542.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 525.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 524.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 469.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 454.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 429.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 415.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 411.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 411.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 402.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 386.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 385.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 384.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 376.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 369.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 362.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 345.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 344.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 344.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 340.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 338.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 338.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 318.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 318.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 318.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 312.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 308.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 307.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 300.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 293.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 293.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 292.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 286.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 285.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 283.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 277.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 277.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 275.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 274.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 271.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 269.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 266.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 260.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 258.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 258.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 250.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 247.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 245.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 244.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 241.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 238.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 234.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 230.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 228.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 227.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 223.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 221.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 220.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 220.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 218.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 216.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 213.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 207.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 202.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 202.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 199.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 198.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 197.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 192.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 192.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 191.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 191.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 189.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 188.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 188.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 185.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 185.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 185.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 184.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 184.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 184.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 184.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 182.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 178.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 177.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 176.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 176.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 174.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 174.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 168.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 167.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 164.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 162.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 160.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 159.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 159.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 158.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 158.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 155.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 155.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 150.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 149.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 149.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 149.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 149.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 148.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 148.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 145.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 143.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 143.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 140.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 139.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 139.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 138.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 137.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 137.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 137.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 137.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 135.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 132.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 132.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 130.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 129.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 129.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 126.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 125.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 125.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 123.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 121.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 121.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 117.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 114.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 111.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 111.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 110.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 109.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 108.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 107.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 106.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 106.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 94.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 93.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 92.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 91.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 91.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 90.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 86.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 84.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 83.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 83.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 75.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 73.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 70.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 59.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 58.2
FF:10181-103D1 60 years, female 80.3
FF:10159-103A6 76 years, female 36.1

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