MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:447.0 nTPM
HPA:447.0 nTPM
GTEx:439.7 nTPM
FANTOM5:388.9 Scaled Tags Per Million
Pig:122.8 nTPM
Mouse:12.9 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 447.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 400.0
2411 Female, age 72, unknown 423.4
1870 Female, age 42, unknown 422.7
2586 Male, age 75, left hemisphere 412.5
1830 Male, age 51, unknown 412.4
1833 Male, age 53, unknown 410.9
2019 Male, age 18, unknown 410.3
2828 Female, age 72, unknown 395.2
2219 Male, age 76, both hemispheres 385.5
1827 Male, age 72, unknown 374.7
2666 Male, age 74, left hemisphere 352.8
Dorsal raphe nucleus
nTPM: 403.4
2750 Male, age 76, both hemispheres 449.9
1828 Male, age 53, unknown 409.4
2047 Male, age 72, unknown 406.2
2016 Female, age 72, unknown 389.2
2298 Female, age 72, unknown 362.6
Inferior colliculus
nTPM: 401.6
1848 Female, age 42, unknown 421.0
1890 Male, age 53, unknown 407.0
2849 Male, age 72, unknown 389.9
2097 Female, age 72, unknown 388.6
Median raphe nucleus
nTPM: 367.2
2220 Male, age 76, midline 367.2
Pedunculopontine tegmental nucleus
nTPM: 392.2
2334 Male, age 80, both hemispheres 404.2
1921 Female, age 85, both hemispheres 390.1
2338 Male, age 61, both hemispheres 382.4
Periaquaductal grey, anterior
nTPM: 375.1
2502 Female, age 75, unknown 390.4
1947 Male, age 18, unknown 374.9
1795 Male, age 51, unknown 360.0
Periaquaductal grey, dorsal
nTPM: 367.5
2464 Female, age 72, unknown 394.3
1840 Male, age 53, unknown 369.1
2850 Male, age 76, both hemispheres 357.8
1831 Male, age 72, unknown 348.7
Periaquaductal grey, lateral
nTPM: 367.7
2053 Male, age 18, unknown 380.7
2272 Male, age 74, both hemispheres 362.6
2140 Male, age 76, both hemispheres 359.9
Pretectal area
nTPM: 384.0
1817 Female, age 42, unknown 419.6
2316 Male, age 76, right hemisphere 407.3
2667 Female, age 75, unknown 401.9
1815 Male, age 53, unknown 396.2
2007 Male, age 72, unknown 379.1
2224 Female, age 72, unknown 376.1
2825 Male, age 18, unknown 375.1
1944 Female, age 72, unknown 373.7
1816 Male, age 51, unknown 371.5
2273 Male, age 74, both hemispheres 368.0
2407 Male, age 75, both hemispheres 355.7
Red nucleus
nTPM: 447.0
1821 Female, age 72, unknown 483.1
1904 Male, age 53, unknown 480.3
1865 Male, age 51, unknown 477.8
1954 Female, age 42, unknown 476.2
2227 Male, age 72, unknown 475.4
2769 Male, age 72, unknown 474.8
2823 Male, age 76, right hemisphere 459.6
2503 Female, age 72, unknown 449.9
2588 Male, age 74, left hemisphere 430.0
2785 Male, age 18, unknown 413.3
2725 Female, age 75, unknown 381.8
2584 Male, age 75, left hemisphere 361.9
Substantia nigra
nTPM: 388.1
2699 Male, age 18, unknown 412.7
1889 Female, age 72, unknown 403.5
1851 Male, age 51, unknown 401.5
1916 Female, age 42, unknown 396.4
2241 Male, age 72, unknown 391.5
2409 Female, age 72, unknown 389.8
2590 Female, age 75, unknown 385.8
2583 Male, age 75, right hemisphere 382.2
1941 Male, age 53, unknown 359.3
2665 Male, age 74, both hemispheres 358.7
Superior colliculus
nTPM: 387.6
1895 Male, age 76, right hemisphere 434.8
2668 Female, age 75, unknown 402.3
1913 Female, age 42, unknown 399.0
1995 Male, age 72, unknown 395.4
1839 Male, age 51, unknown 389.2
2587 Male, age 74, left hemisphere 387.5
2087 Female, age 72, unknown 378.8
1796 Male, age 53, unknown 367.2
2261 Male, age 18, unknown 366.7
2664 Male, age 75, both hemispheres 354.6
Ventral tegmental area
nTPM: 394.2
2410 Female, age 72, unknown 424.3
2223 Female, age 72, unknown 421.9
1915 Female, age 42, unknown 391.1
2021 Male, age 53, unknown 379.0
2218 Male, age 76, both hemispheres 378.3
1942 Male, age 51, unknown 370.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 439.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 439.7
Samples: 139

Max nTPM: 1062.7
Min nTPM: 169.1
Std nTPM: 146.6
Median nTPM: 413.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1062.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 831.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 790.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 776.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 733.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 715.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 708.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 692.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 685.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 675.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 671.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 388.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 388.9
FF:10158-103A5 76 years, female 388.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 122.8
Pig sample Sample description nTPM
Midbrain
nTPM: 113.5
Samples: 4

Max nTPM: 146.6
Min nTPM: 91.2
Sample A Female 146.6
Sample B Female 119.0
Sample C Male 97.0
Sample D Male 91.2
Periaqueductal gray
nTPM: 122.8
Samples: 3

Max nTPM: 133.9
Min nTPM: 103.9
Sample B Female 133.9
Sample C Male 130.5
Sample D Male 103.9
Substantia nigra
nTPM: 117.7
Samples: 4

Max nTPM: 135.8
Min nTPM: 98.7
Sample A Female 135.8
Sample B Female 98.7
Sample C Male 107.2
Sample D Male 128.9
Superior colliculi
nTPM: 110.5
Samples: 4

Max nTPM: 129.9
Min nTPM: 101.4
Sample A Female 129.9
Sample B Female 104.4
Sample C Male 106.3
Sample D Male 101.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 13.3
Min nTPM: 11.7
Sample A Male 11.7
Sample B Male 13.3
Sample C Female 13.3
Sample D Female 13.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68321650 Antisense, RP_041130_02_H01, Mouse strain C57BL/6J (56 days, male) 1.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.