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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:423.6 nTPM
HPA:423.6 nTPM
FANTOM5:300.5 Scaled Tags Per Million
Pig:111.4 nTPM
Mouse:14.0 nTPM
Allen mouse:0.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 423.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 408.9
2396 Male, age 61, right hemisphere 440.2
2497 Male, age 66, unknown 394.6
2032 Female, age 42, unknown 391.9
Centromedial thalamic nucleus
nTPM: 389.7
2401 Male, age 76, right hemisphere 395.7
2279 Female, age 85, left hemisphere 383.8
Habenula
nTPM: 377.8
2276 Male, age 66, unknown 390.6
1957 Male, age 80, both hemispheres 381.1
2203 Male, age 61, left hemisphere 372.6
2252 Male, age 62, unknown 367.1
Lateral geniculate body
nTPM: 423.6
2399 Male, age 61, left hemisphere 450.5
2575 Female, age 94, right hemisphere 442.7
2841 Male, age 80, both hemispheres 442.5
2857 Male, age 74, right hemisphere 432.6
2035 Female, age 72, unknown 427.8
2659 Male, age 66, unknown 404.8
2106 Female, age 67, right hemisphere 400.7
1953 Male, age 62, unknown 387.1
Lateral thalamic nuclei
nTPM: 405.2
2573 Female, age 94, left hemisphere 453.2
2765 Female, age 67, both hemispheres 424.5
2661 Female, age 72, unknown 414.9
2577 Male, age 74, both hemispheres 383.4
1903 Male, age 76, left hemisphere 350.3
Medial dorsal thalamic nucleus
nTPM: 396.6
2572 Female, age 94, right hemisphere 468.1
2026 Male, age 62, unknown 407.8
2576 Male, age 74, both hemispheres 407.3
2492 Male, age 75, right hemisphere 406.8
2498 Male, age 66, unknown 406.6
2660 Female, age 72, unknown 399.3
1859 Male, age 76, both hemispheres 388.5
1971 Male, age 61, right hemisphere 387.0
2402 Female, age 67, both hemispheres 384.5
1810 Male, age 48, unknown 382.3
2283 Male, age 80, right hemisphere 374.9
1930 Female, age 42, unknown 373.0
2039 Female, age 72, unknown 370.2
Medial geniculate body
nTPM: 402.5
2650 Female, age 94, left hemisphere 463.8
2657 Male, age 74, right hemisphere 420.5
2571 Male, age 75, right hemisphere 414.8
2217 Female, age 72, unknown 396.7
2207 Male, age 80, right hemisphere 383.4
2049 Male, age 76, both hemispheres 380.5
1811 Female, age 42, unknown 357.9
Nucleus reuniens
nTPM: 392.2
2205 Male, age 80, left hemisphere 415.5
2210 Female, age 85, left hemisphere 397.9
2212 Female, age 67, left hemisphere 363.3
Nucleus rhomboideus
nTPM: 370.9
2206 Male, age 80, both hemispheres 384.3
2280 Female, age 85, left hemisphere 382.5
2213 Female, age 67, left hemisphere 345.9
Posterior thalamic nucleus
nTPM: 385.3
2649 Female, age 94, both hemispheres 427.6
2655 Male, age 74, right hemisphere 411.6
2495 Female, age 67, right hemisphere 361.8
2266 Male, age 76, right hemisphere 340.2
Pulvinar
nTPM: 406.2
2398 Male, age 61, left hemisphere 455.7
2724 Male, age 74, right hemisphere 430.2
1932 Male, age 80, right hemisphere 425.3
2499 Male, age 66, unknown 419.0
1899 Female, age 42, unknown 407.0
2582 Female, age 72, unknown 406.1
1972 Male, age 62, unknown 398.1
1929 Male, age 48, unknown 381.9
2214 Male, age 76, right hemisphere 373.2
2496 Female, age 67, right hemisphere 365.2
Subthalamic nucleus
nTPM: 401.3
2282 Male, age 61, both hemispheres 438.4
2056 Female, age 72, unknown 431.6
2124 Male, age 62, unknown 417.8
2216 Male, age 48, unknown 415.2
2779 Female, age 42, unknown 390.6
2275 Male, age 66, unknown 382.7
2658 Male, age 74, both hemispheres 370.4
2406 Female, age 72, unknown 363.9
Ventral posterolateral thalamic nucleus
nTPM: 408.4
2570 Male, age 75, right hemisphere 441.9
2397 Male, age 61, right hemisphere 416.6
2740 Male, age 76, right hemisphere 413.9
2581 Female, age 72, unknown 404.4
2197 Male, age 80, both hemispheres 398.3
2578 Male, age 74, both hemispheres 374.9
Ventral posteromedial thalamic nucleus
nTPM: 402.3
2281 Male, age 75, right hemisphere 460.8
2758 Male, age 80, both hemispheres 402.3
2202 Male, age 61, left hemisphere 393.1
2127 Male, age 76, right hemisphere 383.3
2653 Male, age 74, both hemispheres 371.8
Ventral thalamic nuclei
nTPM: 399.2
2858 Female, age 72, unknown 427.2
1845 Male, age 48, unknown 420.0
2580 Male, age 66, unknown 419.5
2291 Female, age 72, unknown 405.1
2204 Male, age 80, both hemispheres 397.3
1860 Male, age 76, both hemispheres 392.7
2285 Male, age 62, unknown 381.8
2652 Male, age 74, left hemisphere 374.8
1912 Female, age 42, unknown 374.5
Ventromedial nucleus
nTPM: 333.9
1982 Female, age 72, unknown 335.2
1822 Female, age 42, unknown 332.5
Zona incerta
nTPM: 372.6
2403 Male, age 62, unknown 385.8
2208 Male, age 80, right hemisphere 380.4
2215 Male, age 66, unknown 376.8
2822 Male, age 74, right hemisphere 360.8
2663 Female, age 72, unknown 359.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 300.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 300.5
FF:10154-103A1 76 years, female 300.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.4
Pig sample Sample description nTPM
Thalamus
nTPM: 111.4
Samples: 4

Max nTPM: 123.5
Min nTPM: 88.4
Sample A Female 115.7
Sample B Female 88.4
Sample C Male 117.9
Sample D Male 123.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 14.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 14.0
Samples: 4

Max nTPM: 16.1
Min nTPM: 11.0
Sample A Male 16.1
Sample B Male 11.0
Sample C Female 14.9
Sample D Female 14.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.7
68321650 Antisense, RP_041130_02_H01, Mouse strain C57BL/6J (56 days, male) 0.7

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