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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:425.3 nTPM
HPA:425.3 nTPM
FANTOM5:273.7 Scaled Tags Per Million
Pig:119.1 nTPM
Allen mouse:2.2 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 425.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 388.2
2188 Female, age 91, both hemispheres 406.3
2090 Male, age 80, both hemispheres 390.1
2301 Female, age 85, both hemispheres 387.1
1984 Male, age 76, both hemispheres 369.4
Dorsal cochlear nucleus
nTPM: 387.0
2370 Male, age 61, both hemispheres 403.7
2058 Male, age 76, both hemispheres 396.4
2187 Female, age 91, both hemispheres 396.2
2378 Male, age 80, both hemispheres 381.0
2802 Male, age 74, right hemisphere 357.7
Dorsal tegmental nucleus
nTPM: 383.9
2083 Male, age 80, both hemispheres 424.9
1936 Male, age 76, left hemisphere 380.8
2326 Male, age 74, both hemispheres 372.3
2358 Male, age 61, both hemispheres 357.4
Dorsolateral tegmental area
nTPM: 399.5
2751 Female, age 85, both hemispheres 447.0
2654 Male, age 80, both hemispheres 423.6
2337 Male, age 61, both hemispheres 397.8
2141 Male, age 76, both hemispheres 367.8
2360 Male, age 74, both hemispheres 361.4
Kolliker-Fuse nucleus
nTPM: 404.5
2163 Male, age 80, both hemispheres 422.8
2793 Female, age 91, left hemisphere 409.5
2315 Male, age 76, right hemisphere 381.1
Lateral lemniscal nuclei
nTPM: 393.1
2320 Female, age 91, left hemisphere 401.9
2169 Male, age 76, both hemispheres 401.7
2036 Male, age 80, both hemispheres 401.1
2746 Female, age 85, left hemisphere 382.8
2453 Male, age 74, right hemisphere 378.0
Lateral parabrachial nucleus
nTPM: 398.7
2792 Male, age 76, both hemispheres 467.6
2013 Male, age 80, both hemispheres 401.2
2139 Female, age 85, right hemisphere 371.5
2790 Male, age 61, both hemispheres 354.5
Lateral vestibular nucleus
nTPM: 421.2
2184 Male, age 76, both hemispheres 459.4
2311 Male, age 80, both hemispheres 382.9
Locus coeruleus
nTPM: 406.0
2014 Male, age 55, unknown 471.2
2317 Female, age 72, unknown 417.5
2788 Male, age 74, unknown 410.3
1980 Male, age 76, both hemispheres 402.2
2123 Female, age 91, both hemispheres 386.9
2162 Male, age 80, both hemispheres 385.7
2720 Male, age 74, both hemispheres 368.6
Medial olivary nucleus
nTPM: 425.3
1962 Male, age 76, both hemispheres 466.3
1943 Male, age 61, both hemispheres 441.9
2138 Female, age 91, both hemispheres 405.8
2851 Male, age 80, both hemispheres 387.1
Medial parabrachial nucleus
nTPM: 407.1
2170 Female, age 91, both hemispheres 418.9
2463 Female, age 85, right hemisphere 416.3
2786 Male, age 76, both hemispheres 416.0
2854 Male, age 80, both hemispheres 392.3
2156 Male, age 61, both hemispheres 392.0
Medial periolivary nuclei
nTPM: 385.5
2063 Male, age 76, both hemispheres 409.2
2081 Male, age 80, both hemispheres 392.7
2458 Female, age 91, both hemispheres 389.5
2791 Male, age 74, right hemisphere 378.1
2171 Female, age 85, both hemispheres 358.1
Motor facial nucleus
nTPM: 386.7
2126 Male, age 61, both hemispheres 412.0
2062 Male, age 76, both hemispheres 394.7
2365 Male, age 74, right hemisphere 391.3
2795 Female, age 91, both hemispheres 387.3
2697 Female, age 85, both hemispheres 378.7
2327 Male, age 80, both hemispheres 356.5
Motor trigeminal nucleus
nTPM: 385.8
2335 Male, age 61, both hemispheres 393.2
2309 Male, age 76, both hemispheres 393.0
2560 Male, age 74, both hemispheres 390.2
2321 Female, age 91, both hemispheres 380.1
2079 Male, age 80, both hemispheres 372.4
Nuclei of the trapezoid body
nTPM: 381.5
1983 Male, age 76, both hemispheres 398.9
2368 Female, age 91, both hemispheres 393.1
2166 Male, age 80, both hemispheres 385.6
2159 Male, age 61, both hemispheres 378.2
2735 Female, age 85, both hemispheres 351.6
Paramedian reticular nucleus
nTPM: 407.3
2052 Male, age 76, both hemispheres 422.3
2050 Female, age 85, both hemispheres 402.3
2057 Male, age 80, both hemispheres 402.3
2313 Male, age 61, both hemispheres 402.3
Pontine nuclei
nTPM: 394.6
2454 Male, age 74, left hemisphere 424.1
1968 Male, age 76, left hemisphere 415.9
2319 Female, age 91, both hemispheres 412.0
2115 Male, age 80, left hemisphere 399.9
2109 Female, age 72, unknown 386.4
1863 Male, age 55, unknown 377.3
2787 Female, age 85, both hemispheres 377.0
2727 Male, age 61, right hemisphere 364.1
Pontine raphe nucleus
nTPM: 384.7
2853 Male, age 76, midline 385.7
2122 Female, age 85, midline 383.7
Posteroventral cochlear nucleus
nTPM: 419.4
2341 Male, age 80, both hemispheres 433.3
2135 Female, age 91, both hemispheres 429.2
2070 Male, age 76, both hemispheres 426.9
2371 Male, age 61, both hemispheres 415.2
2752 Female, age 85, both hemispheres 392.5
Principal sensory trigeminal nucleus
nTPM: 391.7
2324 Male, age 76, both hemispheres 431.1
2367 Female, age 91, left hemisphere 406.6
2008 Male, age 80, left hemisphere 367.8
2158 Male, age 61, both hemispheres 361.2
Reticular pontine nucleus, caudal
nTPM: 399.3
2092 Male, age 76, both hemispheres 428.3
2457 Female, age 91, both hemispheres 411.6
2559 Male, age 74, both hemispheres 383.8
2332 Male, age 80, right hemisphere 373.2
Reticular pontine nucleus, oral
nTPM: 419.2
2361 Male, age 74, both hemispheres 426.6
2012 Female, age 85, both hemispheres 421.6
2167 Male, age 76, both hemispheres 418.5
2366 Female, age 91, both hemispheres 415.0
1939 Male, age 80, both hemispheres 414.1
Reticulotegmental nucleus
nTPM: 384.0
2333 Male, age 80, both hemispheres 394.4
2322 Female, age 91, both hemispheres 394.2
2452 Male, age 74, both hemispheres 375.5
2325 Male, age 76, both hemispheres 371.9
Spinal trigeminal nucleus, oral
nTPM: 401.7
1978 Male, age 76, both hemispheres 411.2
2164 Male, age 80, both hemispheres 404.7
2737 Female, age 85, both hemispheres 389.2
Subcoeruleus area
nTPM: 398.9
2369 Female, age 85, left hemisphere 484.0
2089 Male, age 76, left hemisphere 405.6
1958 Male, age 80, both hemispheres 382.5
2323 Female, age 91, left hemisphere 362.7
2451 Male, age 74, both hemispheres 359.8
Superior olive
nTPM: 399.5
2020 Male, age 76, both hemispheres 458.5
2364 Male, age 74, right hemisphere 395.4
2329 Male, age 80, right hemisphere 386.5
2561 Female, age 91, both hemispheres 380.3
1875 Female, age 85, both hemispheres 376.7
Superior vestibular nucleus
nTPM: 382.3
2061 Male, age 76, both hemispheres 391.0
2015 Male, age 80, both hemispheres 390.5
2383 Male, age 74, both hemispheres 365.5
Ventral periolivary nuclei
nTPM: 385.7
2023 Male, age 76, both hemispheres 458.7
2165 Male, age 80, both hemispheres 377.9
2130 Female, age 85, both hemispheres 354.6
2794 Female, age 91, left hemisphere 351.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 398.5
1959 Male, age 76, both hemispheres 413.3
2359 Male, age 61, both hemispheres 407.5
2456 Female, age 91, both hemispheres 407.4
2840 Female, age 85, both hemispheres 406.9
2161 Male, age 80, both hemispheres 378.3
2449 Male, age 74, both hemispheres 377.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 273.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 273.7
FF:10182-103D2 60 years, female 278.2
FF:10165-103B3 76 years, female 269.2
Pons
Scaled Tags Per Million: 213.8
FF:10033-101E6 18-54 years, mixed 213.8

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 119.1
Pig sample Sample description nTPM
Pons
nTPM: 119.1
Samples: 4

Max nTPM: 136.8
Min nTPM: 103.9
Sample A Female 103.9
Sample B Female 109.3
Sample C Male 126.5
Sample D Male 136.8

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 2.2
68321650 Antisense, RP_041130_02_H01, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.