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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:382.1 nTPM
HPA:382.1 nTPM
GTEx:339.9 nTPM
FANTOM5:191.0 Scaled Tags Per Million
Pig:206.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 382.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 373.7
1981 Female, age 72, midline 394.4
2048 Male, age 55, midline 377.8
2194 Female, age 79, both hemispheres 372.4
2565 Male, age 75, midline 370.2
2816 Male, age 47, midline 353.7
Cervical spinal cord, dorsal horn
nTPM: 382.1
2173 Female, age 72, unknown 443.8
2296 Male, age 66, both hemispheres 391.4
2069 Male, age 47, both hemispheres 389.2
1877 Male, age 55, unknown 370.2
2297 Male, age 75, both hemispheres 353.7
2721 Male, age 90, both hemispheres 344.6
Cervical spinal cord, ventral horn
nTPM: 380.8
2295 Male, age 66, both hemispheres 394.9
2098 Female, age 72, unknown 383.5
2480 Male, age 75, both hemispheres 380.0
2068 Male, age 55, unknown 378.7
2820 Female, age 79, both hemispheres 377.5
2809 Male, age 90, both hemispheres 370.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 339.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 339.9
Samples: 159

Max nTPM: 631.8
Min nTPM: 119.1
Std nTPM: 103.3
Median nTPM: 322.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 631.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 629.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 586.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 583.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 578.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 568.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 559.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 551.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 533.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 532.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 521.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 520.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 508.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 499.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 495.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 492.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 486.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 485.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 481.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 479.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 476.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 463.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 461.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 461.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 456.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 454.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 445.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 445.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 441.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 437.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 428.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 419.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 417.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 416.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 412.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 410.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 400.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 400.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 399.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 398.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 393.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 393.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 392.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 391.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 387.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 386.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 371.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 370.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 370.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 370.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 369.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 368.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 368.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 366.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 365.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 364.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 362.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 360.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 359.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 358.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 358.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 357.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 356.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 354.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 354.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 353.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 353.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 352.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 347.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 347.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 345.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 340.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 338.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 338.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 331.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 329.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 325.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 324.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 322.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 322.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 318.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 318.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 317.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 314.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 313.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 313.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 312.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 307.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 307.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 307.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 306.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 303.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 301.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 300.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 299.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 298.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 298.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 298.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 297.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 289.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 288.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 287.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 287.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 282.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 281.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 281.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 279.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 278.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 277.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 276.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 273.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 273.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 272.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 270.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 268.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 268.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 266.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 266.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 265.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 261.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 261.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 257.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 254.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 253.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 253.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 251.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 250.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 249.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 248.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 246.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 246.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 241.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 241.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 239.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 239.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 238.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 237.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 235.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 235.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 234.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 229.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 229.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 222.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 222.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 221.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 219.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 219.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 215.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 208.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 207.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 204.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 197.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 190.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 188.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 186.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 175.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 174.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 165.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 119.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 191.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 191.0
FF:10181-103D1 60 years, female 217.3
FF:10159-103A6 76 years, female 164.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 206.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 140.2
Samples: 4

Max nTPM: 151.5
Min nTPM: 130.1
Sample A Female 136.4
Sample B Female 130.1
Sample C Male 142.6
Sample D Male 151.5
Ventral spinal cord
nTPM: 206.2
Samples: 4

Max nTPM: 213.0
Min nTPM: 192.3
Sample A Female 210.4
Sample B Female 213.0
Sample C Male 208.9
Sample D Male 192.3

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