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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:484.3 nTPM
HPA:484.3 nTPM
FANTOM5:785.3 Scaled Tags Per Million
Pig:194.2 nTPM
Allen mouse:3.5 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 484.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 437.5
2301 Female, age 85, both hemispheres 484.6
2188 Female, age 91, both hemispheres 469.8
2090 Male, age 80, both hemispheres 423.8
1984 Male, age 76, both hemispheres 371.9
Dorsal cochlear nucleus
nTPM: 446.4
2802 Male, age 74, right hemisphere 457.9
2058 Male, age 76, both hemispheres 456.1
2370 Male, age 61, both hemispheres 456.1
2187 Female, age 91, both hemispheres 438.3
2378 Male, age 80, both hemispheres 423.8
Dorsal tegmental nucleus
nTPM: 429.1
2083 Male, age 80, both hemispheres 476.5
1936 Male, age 76, left hemisphere 459.4
2326 Male, age 74, both hemispheres 429.6
2358 Male, age 61, both hemispheres 350.8
Dorsolateral tegmental area
nTPM: 428.1
2654 Male, age 80, both hemispheres 481.7
2751 Female, age 85, both hemispheres 472.3
2337 Male, age 61, both hemispheres 408.1
2141 Male, age 76, both hemispheres 393.5
2360 Male, age 74, both hemispheres 384.9
Kolliker-Fuse nucleus
nTPM: 451.9
2793 Female, age 91, left hemisphere 469.9
2315 Male, age 76, right hemisphere 450.5
2163 Male, age 80, both hemispheres 435.3
Lateral lemniscal nuclei
nTPM: 391.0
2320 Female, age 91, left hemisphere 424.4
2746 Female, age 85, left hemisphere 397.5
2169 Male, age 76, both hemispheres 388.9
2036 Male, age 80, both hemispheres 387.6
2453 Male, age 74, right hemisphere 356.7
Lateral parabrachial nucleus
nTPM: 437.2
2792 Male, age 76, both hemispheres 523.4
2013 Male, age 80, both hemispheres 426.4
2139 Female, age 85, right hemisphere 412.3
2790 Male, age 61, both hemispheres 386.7
Lateral vestibular nucleus
nTPM: 484.3
2184 Male, age 76, both hemispheres 486.6
2311 Male, age 80, both hemispheres 481.9
Locus coeruleus
nTPM: 376.2
2317 Female, age 72, unknown 436.0
1980 Male, age 76, both hemispheres 390.5
2162 Male, age 80, both hemispheres 386.6
2720 Male, age 74, both hemispheres 364.7
2014 Male, age 55, unknown 358.4
2123 Female, age 91, both hemispheres 351.7
2788 Male, age 74, unknown 345.8
Medial olivary nucleus
nTPM: 467.7
2138 Female, age 91, both hemispheres 505.9
1943 Male, age 61, both hemispheres 482.9
2851 Male, age 80, both hemispheres 445.1
1962 Male, age 76, both hemispheres 437.0
Medial parabrachial nucleus
nTPM: 455.4
2170 Female, age 91, both hemispheres 476.2
2463 Female, age 85, right hemisphere 473.9
2156 Male, age 61, both hemispheres 464.6
2786 Male, age 76, both hemispheres 454.8
2854 Male, age 80, both hemispheres 407.4
Medial periolivary nuclei
nTPM: 395.7
2791 Male, age 74, right hemisphere 420.1
2458 Female, age 91, both hemispheres 403.9
2063 Male, age 76, both hemispheres 400.1
2081 Male, age 80, both hemispheres 400.0
2171 Female, age 85, both hemispheres 354.7
Motor facial nucleus
nTPM: 397.2
2795 Female, age 91, both hemispheres 437.3
2126 Male, age 61, both hemispheres 434.8
2062 Male, age 76, both hemispheres 397.2
2697 Female, age 85, both hemispheres 393.7
2365 Male, age 74, right hemisphere 389.2
2327 Male, age 80, both hemispheres 331.2
Motor trigeminal nucleus
nTPM: 410.0
2309 Male, age 76, both hemispheres 458.7
2335 Male, age 61, both hemispheres 429.8
2321 Female, age 91, both hemispheres 403.0
2560 Male, age 74, both hemispheres 391.1
2079 Male, age 80, both hemispheres 367.6
Nuclei of the trapezoid body
nTPM: 383.5
2368 Female, age 91, both hemispheres 415.0
2166 Male, age 80, both hemispheres 403.3
1983 Male, age 76, both hemispheres 400.3
2159 Male, age 61, both hemispheres 365.3
2735 Female, age 85, both hemispheres 333.5
Paramedian reticular nucleus
nTPM: 391.7
2057 Male, age 80, both hemispheres 429.1
2313 Male, age 61, both hemispheres 405.0
2050 Female, age 85, both hemispheres 367.7
2052 Male, age 76, both hemispheres 365.1
Pontine nuclei
nTPM: 390.1
2319 Female, age 91, both hemispheres 434.8
1968 Male, age 76, left hemisphere 418.8
2115 Male, age 80, left hemisphere 407.0
1863 Male, age 55, unknown 406.7
2109 Female, age 72, unknown 394.0
2454 Male, age 74, left hemisphere 389.9
2787 Female, age 85, both hemispheres 350.9
2727 Male, age 61, right hemisphere 318.9
Pontine raphe nucleus
nTPM: 399.3
2853 Male, age 76, midline 444.3
2122 Female, age 85, midline 354.3
Posteroventral cochlear nucleus
nTPM: 449.0
2371 Male, age 61, both hemispheres 487.9
2135 Female, age 91, both hemispheres 478.9
2341 Male, age 80, both hemispheres 445.6
2070 Male, age 76, both hemispheres 427.3
2752 Female, age 85, both hemispheres 405.3
Principal sensory trigeminal nucleus
nTPM: 402.3
2324 Male, age 76, both hemispheres 488.3
2367 Female, age 91, left hemisphere 407.3
2158 Male, age 61, both hemispheres 362.3
2008 Male, age 80, left hemisphere 351.4
Reticular pontine nucleus, caudal
nTPM: 408.7
2092 Male, age 76, both hemispheres 443.3
2457 Female, age 91, both hemispheres 423.3
2559 Male, age 74, both hemispheres 410.1
2332 Male, age 80, right hemisphere 358.2
Reticular pontine nucleus, oral
nTPM: 426.4
2167 Male, age 76, both hemispheres 476.3
1939 Male, age 80, both hemispheres 474.2
2366 Female, age 91, both hemispheres 454.4
2012 Female, age 85, both hemispheres 382.2
2361 Male, age 74, both hemispheres 344.8
Reticulotegmental nucleus
nTPM: 421.9
2333 Male, age 80, both hemispheres 435.6
2322 Female, age 91, both hemispheres 435.4
2452 Male, age 74, both hemispheres 412.0
2325 Male, age 76, both hemispheres 404.6
Spinal trigeminal nucleus, oral
nTPM: 409.3
1978 Male, age 76, both hemispheres 426.4
2164 Male, age 80, both hemispheres 426.3
2737 Female, age 85, both hemispheres 375.1
Subcoeruleus area
nTPM: 424.1
2369 Female, age 85, left hemisphere 487.0
2451 Male, age 74, both hemispheres 430.4
2089 Male, age 76, left hemisphere 404.1
1958 Male, age 80, both hemispheres 402.2
2323 Female, age 91, left hemisphere 396.6
Superior olive
nTPM: 392.7
2020 Male, age 76, both hemispheres 429.4
2561 Female, age 91, both hemispheres 402.7
2364 Male, age 74, right hemisphere 397.3
2329 Male, age 80, right hemisphere 384.0
1875 Female, age 85, both hemispheres 350.2
Superior vestibular nucleus
nTPM: 444.2
2061 Male, age 76, both hemispheres 472.7
2015 Male, age 80, both hemispheres 445.6
2383 Male, age 74, both hemispheres 414.4
Ventral periolivary nuclei
nTPM: 375.2
2023 Male, age 76, both hemispheres 420.2
2165 Male, age 80, both hemispheres 391.6
2794 Female, age 91, left hemisphere 357.0
2130 Female, age 85, both hemispheres 331.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 409.2
2359 Male, age 61, both hemispheres 445.0
2456 Female, age 91, both hemispheres 432.2
1959 Male, age 76, both hemispheres 418.1
2161 Male, age 80, both hemispheres 404.7
2840 Female, age 85, both hemispheres 392.3
2449 Male, age 74, both hemispheres 362.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 785.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 785.3
FF:10182-103D2 60 years, female 953.5
FF:10165-103B3 76 years, female 617.2
Pons
Scaled Tags Per Million: 546.5
FF:10033-101E6 18-54 years, mixed 546.5

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 194.2
Pig sample Sample description nTPM
Pons
nTPM: 194.2
Samples: 4

Max nTPM: 257.2
Min nTPM: 142.9
Sample A Female 174.7
Sample B Female 142.9
Sample C Male 201.9
Sample D Male 257.2

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 3.5
1465 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 7.0
1464 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 3.0
74581363 Antisense, RP_060215_03_B02, Mouse strain C57BL/6J (56 days, male) 0.1

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by the Knut & Alice Wallenberg Foundation.