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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:437.1 nTPM
HPA:437.1 nTPM
GTEx:630.7 nTPM
FANTOM5:444.0 Scaled Tags Per Million
Pig:90.9 nTPM
Mouse:203.2 nTPM
Allen mouse:2.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 437.1
Sample id Sample description nTPM
Amygdala
nTPM: 434.4
2695 Female, age 67, right hemisphere 530.1
2814 Male, age 76, right hemisphere 475.8
2517 Female, age 94, left hemisphere 407.9
2514 Male, age 75, right hemisphere 382.3
1987 Female, age 91, left hemisphere 375.7
Basal amygdala
nTPM: 386.8
2609 Male, age 75, right hemisphere 462.4
1955 Male, age 76, both hemispheres 406.7
2827 Female, age 67, right hemisphere 372.9
2685 Female, age 94, left hemisphere 368.4
2110 Male, age 80, left hemisphere 366.9
2243 Female, age 91, right hemisphere 343.5
Central amygdala
nTPM: 437.1
2826 Female, age 94, left hemisphere 503.4
1905 Male, age 76, both hemispheres 463.3
2515 Male, age 75, right hemisphere 442.5
2239 Male, age 80, left hemisphere 398.5
2701 Female, age 91, right hemisphere 377.9
Corticomedial amygdala
nTPM: 353.3
2428 Male, age 75, right hemisphere 395.2
2829 Male, age 80, left hemisphere 382.7
2240 Male, age 76, both hemispheres 349.9
2535 Female, age 67, right hemisphere 332.0
2429 Female, age 94, left hemisphere 331.4
2242 Female, age 91, right hemisphere 328.7
Lateral amygdala
nTPM: 426.6
2516 Male, age 75, right hemisphere 460.4
2256 Male, age 80, left hemisphere 447.1
1883 Male, age 76, both hemispheres 433.4
2534 Female, age 94, left hemisphere 417.4
2830 Female, age 67, right hemisphere 411.7
2255 Female, age 91, right hemisphere 389.7
Stria terminalis, bed nucleus
nTPM: 311.0
2201 Male, age 74, unknown 362.3
1974 Female, age 91, both hemispheres 295.2
2486 Female, age 94, both hemispheres 275.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 630.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 630.7
Samples: 152

Max nTPM: 1311.4
Min nTPM: 39.0
Std nTPM: 236.2
Median nTPM: 607.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1311.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1260.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1214.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1192.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1186.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1176.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1094.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1091.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1054.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1032.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1010.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 999.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 973.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 968.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 954.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 951.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 945.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 927.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 910.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 909.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 907.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 894.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 879.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 879.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 874.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 867.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 857.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 846.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 845.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 835.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 835.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 834.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 826.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 816.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 815.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 810.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 799.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 794.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 791.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 773.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 765.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 735.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 732.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 725.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 716.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 711.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 709.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 708.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 703.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 703.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 686.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 685.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 683.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 678.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 676.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 675.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 673.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 669.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 666.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 665.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 664.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 651.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 648.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 647.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 642.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 640.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 638.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 635.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 634.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 629.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 628.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 628.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 625.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 617.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 614.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 611.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 603.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 602.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 601.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 597.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 594.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 586.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 580.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 575.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 573.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 567.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 564.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 564.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 560.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 557.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 551.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 544.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 535.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 532.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 527.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 525.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 515.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 510.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 506.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 501.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 501.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 500.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 498.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 492.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 487.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 482.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 478.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 477.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 476.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 475.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 474.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 472.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 471.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 459.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 457.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 455.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 445.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 441.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 440.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 440.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 433.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 423.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 413.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 408.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 407.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 406.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 401.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 397.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 389.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 387.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 382.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 377.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 375.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 372.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 371.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 371.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 370.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 369.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 357.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 357.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 353.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 346.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 344.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 317.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 302.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 298.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 298.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 261.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 256.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 213.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 172.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 39.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 444.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 444.0
FF:10151-102I7 76 years, female 444.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 90.9
Pig sample Sample description nTPM
Amygdala
nTPM: 90.9
Samples: 4

Max nTPM: 112.2
Min nTPM: 68.9
Sample A Female 91.7
Sample B Female 112.2
Sample C Male 90.9
Sample D Male 68.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 203.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 203.3
Samples: 4

Max nTPM: 283.8
Min nTPM: 166.0
Sample A Male 167.4
Sample B Male 166.0
Sample C Female 283.8
Sample D Female 195.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.2
1465 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 4.3
1464 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 2.9
74581363 Antisense, RP_060215_03_B02, Mouse strain C57BL/6J (56 days, male) 0.1

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