We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TSC22D4
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • TSC22D4
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:485.2 nTPM
HPA:485.2 nTPM
GTEx:758.3 nTPM
FANTOM5:690.6 Scaled Tags Per Million
Pig:301.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 485.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 440.5
1981 Female, age 72, midline 477.8
2194 Female, age 79, both hemispheres 453.5
2048 Male, age 55, midline 443.9
2816 Male, age 47, midline 419.1
2565 Male, age 75, midline 408.1
Cervical spinal cord, dorsal horn
nTPM: 432.7
2173 Female, age 72, unknown 551.0
2296 Male, age 66, both hemispheres 434.2
1877 Male, age 55, unknown 432.8
2721 Male, age 90, both hemispheres 400.4
2069 Male, age 47, both hemispheres 399.0
2297 Male, age 75, both hemispheres 378.7
Cervical spinal cord, ventral horn
nTPM: 485.2
2295 Male, age 66, both hemispheres 538.2
2809 Male, age 90, both hemispheres 519.0
2068 Male, age 55, unknown 480.8
2480 Male, age 75, both hemispheres 469.8
2098 Female, age 72, unknown 462.3
2820 Female, age 79, both hemispheres 441.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 758.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 758.3
Samples: 159

Max nTPM: 1477.5
Min nTPM: 217.1
Std nTPM: 253.2
Median nTPM: 748.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1477.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1356.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1310.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1287.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1264.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1224.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1223.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1215.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1190.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1177.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1160.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1151.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1145.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1138.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1124.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1116.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1109.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1105.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1100.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1098.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1079.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1053.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1052.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1052.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1046.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1033.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1029.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1012.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1008.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 999.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 999.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 998.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 998.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 992.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 979.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 979.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 971.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 962.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 954.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 953.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 924.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 921.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 898.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 893.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 891.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 844.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 844.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 844.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 844.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 843.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 833.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 831.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 830.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 828.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 827.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 821.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 815.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 800.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 792.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 790.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 787.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 787.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 786.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 786.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 785.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 785.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 783.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 778.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 777.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 774.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 772.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 772.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 766.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 763.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 757.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 754.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 754.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 749.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 748.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 748.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 746.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 745.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 744.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 742.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 740.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 729.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 729.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 728.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 725.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 724.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 722.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 713.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 713.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 700.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 692.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 690.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 687.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 682.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 678.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 674.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 670.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 670.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 667.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 663.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 654.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 652.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 643.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 642.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 639.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 637.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 637.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 627.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 623.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 614.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 606.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 599.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 594.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 584.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 571.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 566.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 564.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 561.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 556.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 551.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 548.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 544.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 543.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 540.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 519.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 517.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 506.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 505.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 504.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 503.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 491.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 480.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 471.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 467.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 464.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 456.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 454.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 448.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 447.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 438.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 429.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 428.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 413.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 394.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 383.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 379.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 371.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 342.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 335.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 328.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 297.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 290.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 269.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 250.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 217.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 690.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 690.6
FF:10181-103D1 60 years, female 883.5
FF:10159-103A6 76 years, female 497.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 301.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 228.8
Samples: 4

Max nTPM: 241.6
Min nTPM: 222.2
Sample A Female 224.3
Sample B Female 241.6
Sample C Male 222.2
Sample D Male 227.0
Ventral spinal cord
nTPM: 301.4
Samples: 4

Max nTPM: 322.7
Min nTPM: 278.2
Sample A Female 293.6
Sample B Female 322.7
Sample C Male 278.2
Sample D Male 311.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.