MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:563.9 nTPM
HPA:563.9 nTPM
GTEx:870.4 nTPM
FANTOM5:864.0 Scaled Tags Per Million
Pig:224.5 nTPM
Mouse:133.4 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 563.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 484.8
2586 Male, age 75, left hemisphere 616.7
2828 Female, age 72, unknown 585.2
1870 Female, age 42, unknown 504.0
1833 Male, age 53, unknown 501.3
1830 Male, age 51, unknown 491.9
2411 Female, age 72, unknown 481.9
2019 Male, age 18, unknown 443.0
1827 Male, age 72, unknown 438.5
2666 Male, age 74, left hemisphere 418.1
2219 Male, age 76, both hemispheres 367.2
Dorsal raphe nucleus
nTPM: 443.6
2750 Male, age 76, both hemispheres 475.3
2016 Female, age 72, unknown 467.3
1828 Male, age 53, unknown 454.3
2047 Male, age 72, unknown 414.7
2298 Female, age 72, unknown 406.5
Inferior colliculus
nTPM: 429.2
1848 Female, age 42, unknown 448.8
2849 Male, age 72, unknown 436.8
1890 Male, age 53, unknown 436.6
2097 Female, age 72, unknown 394.5
Median raphe nucleus
nTPM: 373.7
2220 Male, age 76, midline 373.7
Pedunculopontine tegmental nucleus
nTPM: 405.3
2334 Male, age 80, both hemispheres 434.7
1921 Female, age 85, both hemispheres 409.0
2338 Male, age 61, both hemispheres 372.1
Periaquaductal grey, anterior
nTPM: 414.6
2502 Female, age 75, unknown 423.9
1947 Male, age 18, unknown 412.7
1795 Male, age 51, unknown 407.1
Periaquaductal grey, dorsal
nTPM: 415.3
2464 Female, age 72, unknown 446.5
2850 Male, age 76, both hemispheres 416.8
1831 Male, age 72, unknown 401.9
1840 Male, age 53, unknown 396.0
Periaquaductal grey, lateral
nTPM: 420.0
2053 Male, age 18, unknown 449.8
2140 Male, age 76, both hemispheres 422.5
2272 Male, age 74, both hemispheres 387.6
Pretectal area
nTPM: 417.0
1815 Male, age 53, unknown 449.8
2825 Male, age 18, unknown 449.6
2316 Male, age 76, right hemisphere 449.5
2667 Female, age 75, unknown 444.6
1817 Female, age 42, unknown 434.3
2407 Male, age 75, both hemispheres 425.0
1944 Female, age 72, unknown 395.9
2273 Male, age 74, both hemispheres 393.6
2224 Female, age 72, unknown 389.0
2007 Male, age 72, unknown 382.9
1816 Male, age 51, unknown 372.3
Red nucleus
nTPM: 563.9
2769 Male, age 72, unknown 651.2
2823 Male, age 76, right hemisphere 617.7
2227 Male, age 72, unknown 607.5
1865 Male, age 51, unknown 597.5
1904 Male, age 53, unknown 587.0
1954 Female, age 42, unknown 584.2
2503 Female, age 72, unknown 573.0
1821 Female, age 72, unknown 567.8
2588 Male, age 74, left hemisphere 528.9
2725 Female, age 75, unknown 515.7
2785 Male, age 18, unknown 502.2
2584 Male, age 75, left hemisphere 433.7
Substantia nigra
nTPM: 443.6
2699 Male, age 18, unknown 511.8
2583 Male, age 75, right hemisphere 500.7
1851 Male, age 51, unknown 476.9
1916 Female, age 42, unknown 445.1
2409 Female, age 72, unknown 435.3
2665 Male, age 74, both hemispheres 433.6
2590 Female, age 75, unknown 431.5
1889 Female, age 72, unknown 428.1
2241 Male, age 72, unknown 389.9
1941 Male, age 53, unknown 382.7
Superior colliculus
nTPM: 459.4
1995 Male, age 72, unknown 553.5
1913 Female, age 42, unknown 510.2
2664 Male, age 75, both hemispheres 463.8
1796 Male, age 53, unknown 459.2
2668 Female, age 75, unknown 455.5
1895 Male, age 76, right hemisphere 452.0
1839 Male, age 51, unknown 451.1
2587 Male, age 74, left hemisphere 436.4
2087 Female, age 72, unknown 408.9
2261 Male, age 18, unknown 403.0
Ventral tegmental area
nTPM: 445.7
2223 Female, age 72, unknown 468.4
1915 Female, age 42, unknown 460.9
2410 Female, age 72, unknown 459.0
1942 Male, age 51, unknown 438.8
2021 Male, age 53, unknown 433.7
2218 Male, age 76, both hemispheres 413.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 870.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 870.4
Samples: 139

Max nTPM: 2209.9
Min nTPM: 194.5
Std nTPM: 349.1
Median nTPM: 811.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2209.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2011.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1622.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1561.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1541.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1536.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1494.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1491.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1450.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1437.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1415.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 864.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 864.0
FF:10158-103A5 76 years, female 864.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 224.5
Pig sample Sample description nTPM
Midbrain
nTPM: 224.5
Samples: 4

Max nTPM: 396.4
Min nTPM: 137.7
Sample A Female 396.4
Sample B Female 224.3
Sample C Male 139.7
Sample D Male 137.7
Periaqueductal gray
nTPM: 161.6
Samples: 3

Max nTPM: 185.5
Min nTPM: 147.9
Sample B Female 185.5
Sample C Male 151.4
Sample D Male 147.9
Substantia nigra
nTPM: 216.2
Samples: 4

Max nTPM: 278.1
Min nTPM: 166.3
Sample A Female 238.0
Sample B Female 166.3
Sample C Male 182.4
Sample D Male 278.1
Superior colliculi
nTPM: 185.3
Samples: 4

Max nTPM: 241.1
Min nTPM: 110.8
Sample A Female 241.1
Sample B Female 110.8
Sample C Male 177.2
Sample D Male 212.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 133.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 133.4
Samples: 4

Max nTPM: 157.5
Min nTPM: 111.5
Sample A Male 157.5
Sample B Male 116.6
Sample C Female 111.5
Sample D Female 147.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
1465 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 6.1
1464 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 2.1
74581363 Antisense, RP_060215_03_B02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.