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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:400.8 nTPM
HPA:400.8 nTPM
FANTOM5:50.5 Scaled Tags Per Million
Pig:105.9 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 400.8
Sample id Sample description nTPM
Area postrema
nTPM: 353.5
2799 Male, age 61, both hemispheres 368.7
2306 Male, age 80, both hemispheres 362.5
2054 Male, age 76, both hemispheres 329.3
Cuneate nuclei
nTPM: 335.6
2381 Male, age 80, both hemispheres 343.0
2131 Male, age 76, both hemispheres 335.2
2376 Male, age 61, both hemispheres 328.6
Dorsal medullary reticular nucleus
nTPM: 353.3
2373 Male, age 61, both hemispheres 395.9
2088 Male, age 76, both hemispheres 342.8
2040 Female, age 85, both hemispheres 321.2
Dorsal motor vagal complex
nTPM: 381.1
2797 Male, age 61, both hemispheres 538.5
2844 Male, age 55, unknown 401.3
2643 Male, age 74, both hemispheres 388.5
2133 Female, age 91, both hemispheres 359.1
2185 Male, age 76, both hemispheres 353.9
2000 Male, age 74, unknown 342.9
2807 Female, age 85, both hemispheres 342.6
2813 Female, age 72, unknown 322.2
Gigantocellular reticular nuclei, medullary
nTPM: 329.2
2314 Male, age 61, both hemispheres 371.5
2022 Male, age 76, right hemisphere 347.4
2387 Female, age 91, both hemispheres 340.7
1876 Female, age 85, both hemispheres 314.0
2310 Male, age 80, both hemispheres 304.9
2462 Male, age 74, both hemispheres 296.7
Gigantocellular reticular nuclei, pars
nTPM: 324.7
2336 Male, age 61, both hemispheres 333.4
2084 Female, age 85, both hemispheres 333.1
2706 Male, age 80, both hemispheres 322.4
2168 Male, age 76, both hemispheres 317.5
2330 Male, age 80, both hemispheres 316.9
Inferior olive
nTPM: 400.8
2379 Male, age 80, both hemispheres 429.2
2085 Female, age 85, both hemispheres 406.5
2563 Male, age 74, both hemispheres 403.0
2628 Female, age 91, both hemispheres 389.6
2178 Male, age 61, both hemispheres 375.6
Lateral medullary reticular nucleus
nTPM: 347.0
2804 Female, age 91, both hemispheres 403.9
2374 Male, age 61, both hemispheres 370.2
2190 Female, age 85, both hemispheres 341.6
2852 Male, age 80, both hemispheres 336.5
2044 Male, age 76, both hemispheres 333.7
2305 Male, age 74, both hemispheres 295.9
Medial vestibular nucleus
nTPM: 352.0
2803 Female, age 91, both hemispheres 362.7
2801 Male, age 74, both hemispheres 357.3
2624 Male, age 61, both hemispheres 351.9
2134 Male, age 76, both hemispheres 351.5
2743 Female, age 85, both hemispheres 344.5
2093 Male, age 80, both hemispheres 344.3
Motor hypoglossal nucleus
nTPM: 328.5
2125 Female, age 91, both hemispheres 356.6
2461 Male, age 61, both hemispheres 333.9
2182 Male, age 80, both hemispheres 320.6
2132 Female, age 85, both hemispheres 317.2
2277 Male, age 76, both hemispheres 314.1
Nucleus ambiguus
nTPM: 339.5
2071 Male, age 76, both hemispheres 345.7
2096 Female, age 85, both hemispheres 333.2
Nucleus cuneatus
nTPM: 387.0
2805 Female, age 91, both hemispheres 472.0
2562 Male, age 61, both hemispheres 402.9
2564 Male, age 74, both hemispheres 388.2
2100 Male, age 76, both hemispheres 363.5
2380 Male, age 80, both hemispheres 358.6
2808 Female, age 85, both hemispheres 336.7
Nucleus gracilis
nTPM: 352.2
2299 Female, age 85, both hemispheres 381.8
2382 Male, age 80, both hemispheres 338.9
2627 Male, age 74, both hemispheres 335.8
Nucleus raphe magnus
nTPM: 299.4
2051 Male, age 76, both hemispheres 314.7
2328 Male, age 80, both hemispheres 305.6
2160 Male, age 61, both hemispheres 304.0
2455 Male, age 74, both hemispheres 295.9
2459 Female, age 91, both hemispheres 288.3
2172 Female, age 85, both hemispheres 287.7
Nucleus raphe obscurus
nTPM: 316.0
2800 Male, age 61, midline 327.0
2845 Female, age 85, midline 318.4
2142 Male, age 76, midline 302.8
Nucleus raphe pallidus
nTPM: 289.4
2183 Male, age 80, midline 297.9
2145 Male, age 76, midline 292.6
1924 Male, age 61, midline 277.8
Nucleus tractus solitarii
nTPM: 338.4
2144 Female, age 91, right hemisphere 352.4
2191 Female, age 85, both hemispheres 348.4
2656 Male, age 76, both hemispheres 331.9
2307 Male, age 80, both hemispheres 320.9
Parvicellular reticular nuclei
nTPM: 302.9
2095 Male, age 76, both hemispheres 319.4
2119 Male, age 80, both hemispheres 303.4
2558 Male, age 74, both hemispheres 285.8
Parvicellular reticular nuclei, medullary
nTPM: 345.5
2181 Male, age 80, left hemisphere 362.8
2189 Female, age 91, both hemispheres 342.7
2091 Female, age 85, both hemispheres 330.9
Peritrigeminal nucleus
nTPM: 336.7
2067 Female, age 85, both hemispheres 344.3
2136 Male, age 76, both hemispheres 338.8
2179 Male, age 61, both hemispheres 327.1
Prepositus hypoglossal nucleus
nTPM: 360.2
2086 Male, age 80, both hemispheres 363.5
2855 Female, age 85, right hemisphere 356.9
Spinal trigeminal nucleus, caudal
nTPM: 347.4
2390 Female, age 91, both hemispheres 359.6
2642 Male, age 74, both hemispheres 356.4
2447 Male, age 76, both hemispheres 351.2
2308 Male, age 80, both hemispheres 344.8
2312 Male, age 61, both hemispheres 324.9
Spinal trigeminal nucleus, interpolar
nTPM: 333.4
2389 Female, age 91, both hemispheres 360.2
2625 Male, age 61, both hemispheres 350.0
2386 Female, age 85, both hemispheres 322.5
2066 Male, age 76, right hemisphere 317.6
2033 Male, age 80, both hemispheres 317.0
Spinal vestibular nucleus
nTPM: 354.8
2384 Male, age 74, both hemispheres 394.9
2806 Female, age 85, both hemispheres 364.8
2186 Female, age 91, both hemispheres 358.9
2796 Male, age 61, both hemispheres 344.1
2748 Male, age 76, both hemispheres 333.7
2780 Male, age 80, both hemispheres 332.7
Ventral medullary reticular nucleus
nTPM: 366.9
2372 Male, age 61, both hemispheres 406.6
2060 Male, age 76, both hemispheres 327.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 340.7
2302 Female, age 91, both hemispheres 390.3
2180 Male, age 61, both hemispheres 334.0
1986 Male, age 76, both hemispheres 328.5
2118 Male, age 80, both hemispheres 328.5
2741 Female, age 85, both hemispheres 321.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 50.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 50.5
FF:10038-101F2 18-64 years, mixed 78.9
FF:10155-103A2 76 years, female 41.5
FF:10174-103C3 60 years, female 31.1

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 105.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 105.9
Samples: 4

Max nTPM: 130.2
Min nTPM: 79.9
Sample A Female 79.9
Sample B Female 100.9
Sample C Male 130.2
Sample D Male 112.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.