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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:380.4 nTPM
HPA:380.4 nTPM
GTEx:164.9 nTPM
FANTOM5:37.9 Scaled Tags Per Million
Pig:106.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 380.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 351.8
2565 Male, age 75, midline 401.3
2048 Male, age 55, midline 346.7
2194 Female, age 79, both hemispheres 341.2
2816 Male, age 47, midline 335.2
1981 Female, age 72, midline 334.7
Cervical spinal cord, dorsal horn
nTPM: 325.7
2721 Male, age 90, both hemispheres 351.0
1877 Male, age 55, unknown 337.5
2173 Female, age 72, unknown 332.4
2297 Male, age 75, both hemispheres 332.4
2069 Male, age 47, both hemispheres 303.6
2296 Male, age 66, both hemispheres 297.5
Cervical spinal cord, ventral horn
nTPM: 380.4
2480 Male, age 75, both hemispheres 494.0
2809 Male, age 90, both hemispheres 402.3
2295 Male, age 66, both hemispheres 390.3
2820 Female, age 79, both hemispheres 342.8
2068 Male, age 55, unknown 342.3
2098 Female, age 72, unknown 311.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 164.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 164.9
Samples: 159

Max nTPM: 532.3
Min nTPM: 35.0
Std nTPM: 81.4
Median nTPM: 138.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 532.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 485.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 385.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 363.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 349.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 346.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 345.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 326.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 303.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 302.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 302.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 302.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 300.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 285.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 280.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 274.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 273.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 271.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 270.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 264.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 256.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 255.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 254.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 248.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 243.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 239.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 235.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 234.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 231.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 227.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 227.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 226.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 222.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 217.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 216.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 212.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 210.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 209.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 208.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 204.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 204.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 201.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 200.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 195.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 193.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 191.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 188.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 187.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 185.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 184.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 182.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 181.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 177.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 177.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 176.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 175.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 175.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 174.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 174.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 172.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 169.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 169.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 168.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 166.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 165.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 164.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 162.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 159.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 159.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 151.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 151.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 149.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 149.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 147.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 142.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 142.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 141.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 139.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 138.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 138.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 138.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 138.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 137.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 135.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 131.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 130.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 128.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 128.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 128.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 127.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 127.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 127.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 126.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 126.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 124.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 124.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 124.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 124.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 122.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 121.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 121.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 120.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 119.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 119.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 119.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 118.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 117.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 117.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 117.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 116.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 115.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 115.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 114.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 113.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 113.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 111.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 110.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 110.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 108.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 107.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 107.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 106.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 105.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 105.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 104.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 104.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 104.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 103.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 102.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 101.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 101.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 100.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 100.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 99.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 99.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 97.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 97.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 96.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 95.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 92.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 91.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 90.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 89.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 88.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 85.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 85.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 85.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 80.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 79.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 77.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 71.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 71.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 69.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 65.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 58.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 56.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 53.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 52.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 35.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 37.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 37.9
FF:10181-103D1 60 years, female 45.6
FF:10159-103A6 76 years, female 30.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 89.4
Samples: 4

Max nTPM: 103.7
Min nTPM: 75.7
Sample A Female 75.7
Sample B Female 87.1
Sample C Male 103.7
Sample D Male 91.1
Ventral spinal cord
nTPM: 106.7
Samples: 4

Max nTPM: 123.9
Min nTPM: 95.2
Sample A Female 98.1
Sample B Female 109.4
Sample C Male 123.9
Sample D Male 95.2

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