MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:408.7 nTPM
HPA:408.7 nTPM
GTEx:483.0 nTPM
FANTOM5:29.5 Scaled Tags Per Million
Pig:109.5 nTPM
Mouse:71.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 408.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 408.7
2586 Male, age 75, left hemisphere 680.0
2828 Female, age 72, unknown 452.1
2219 Male, age 76, both hemispheres 391.0
1827 Male, age 72, unknown 390.2
2666 Male, age 74, left hemisphere 367.6
1833 Male, age 53, unknown 367.3
1870 Female, age 42, unknown 362.4
2019 Male, age 18, unknown 359.7
1830 Male, age 51, unknown 358.9
2411 Female, age 72, unknown 357.7
Dorsal raphe nucleus
nTPM: 376.5
2016 Female, age 72, unknown 404.4
1828 Male, age 53, unknown 396.0
2047 Male, age 72, unknown 387.9
2298 Female, age 72, unknown 349.6
2750 Male, age 76, both hemispheres 344.5
Inferior colliculus
nTPM: 384.8
2849 Male, age 72, unknown 418.1
1848 Female, age 42, unknown 391.0
1890 Male, age 53, unknown 388.6
2097 Female, age 72, unknown 341.4
Median raphe nucleus
nTPM: 343.1
2220 Male, age 76, midline 343.1
Pedunculopontine tegmental nucleus
nTPM: 323.1
1921 Female, age 85, both hemispheres 353.7
2334 Male, age 80, both hemispheres 338.9
2338 Male, age 61, both hemispheres 276.7
Periaquaductal grey, anterior
nTPM: 400.1
2502 Female, age 75, unknown 436.5
1795 Male, age 51, unknown 393.2
1947 Male, age 18, unknown 370.7
Periaquaductal grey, dorsal
nTPM: 394.7
1840 Male, age 53, unknown 435.6
2464 Female, age 72, unknown 401.9
2850 Male, age 76, both hemispheres 383.0
1831 Male, age 72, unknown 358.3
Periaquaductal grey, lateral
nTPM: 363.1
2140 Male, age 76, both hemispheres 380.9
2053 Male, age 18, unknown 380.3
2272 Male, age 74, both hemispheres 328.1
Pretectal area
nTPM: 378.3
2825 Male, age 18, unknown 406.6
2667 Female, age 75, unknown 403.6
2407 Male, age 75, both hemispheres 401.7
1817 Female, age 42, unknown 394.6
1815 Male, age 53, unknown 388.0
2007 Male, age 72, unknown 383.6
1816 Male, age 51, unknown 381.7
1944 Female, age 72, unknown 370.5
2316 Male, age 76, right hemisphere 361.3
2224 Female, age 72, unknown 347.2
2273 Male, age 74, both hemispheres 322.4
Red nucleus
nTPM: 398.2
2588 Male, age 74, left hemisphere 478.6
2769 Male, age 72, unknown 428.8
2503 Female, age 72, unknown 425.0
1821 Female, age 72, unknown 416.3
2227 Male, age 72, unknown 415.5
2584 Male, age 75, left hemisphere 404.4
1954 Female, age 42, unknown 402.7
1904 Male, age 53, unknown 389.3
1865 Male, age 51, unknown 379.1
2785 Male, age 18, unknown 363.2
2823 Male, age 76, right hemisphere 351.5
2725 Female, age 75, unknown 323.7
Substantia nigra
nTPM: 401.7
2665 Male, age 74, both hemispheres 484.1
2699 Male, age 18, unknown 456.2
1916 Female, age 42, unknown 434.8
1851 Male, age 51, unknown 421.6
2583 Male, age 75, right hemisphere 411.7
2590 Female, age 75, unknown 379.9
1889 Female, age 72, unknown 376.5
2241 Male, age 72, unknown 357.1
1941 Male, age 53, unknown 350.0
2409 Female, age 72, unknown 344.7
Superior colliculus
nTPM: 397.0
2664 Male, age 75, both hemispheres 573.3
2668 Female, age 75, unknown 440.6
1839 Male, age 51, unknown 390.0
1796 Male, age 53, unknown 388.7
2261 Male, age 18, unknown 381.3
2587 Male, age 74, left hemisphere 373.2
2087 Female, age 72, unknown 367.5
1995 Male, age 72, unknown 362.9
1895 Male, age 76, right hemisphere 358.9
1913 Female, age 42, unknown 333.2
Ventral tegmental area
nTPM: 371.9
1942 Male, age 51, unknown 392.2
1915 Female, age 42, unknown 391.8
2410 Female, age 72, unknown 378.8
2021 Male, age 53, unknown 371.0
2218 Male, age 76, both hemispheres 355.7
2223 Female, age 72, unknown 341.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 483.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 483.0
Samples: 139

Max nTPM: 1755.5
Min nTPM: 86.2
Std nTPM: 265.9
Median nTPM: 442.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1755.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1542.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1154.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1111.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1059.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 1020.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 895.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 831.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 830.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 824.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 808.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.5
FF:10158-103A5 76 years, female 29.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 109.5
Pig sample Sample description nTPM
Midbrain
nTPM: 102.7
Samples: 4

Max nTPM: 140.1
Min nTPM: 71.4
Sample A Female 94.5
Sample B Female 104.9
Sample C Male 140.1
Sample D Male 71.4
Periaqueductal gray
nTPM: 95.3
Samples: 3

Max nTPM: 105.7
Min nTPM: 85.4
Sample B Female 94.9
Sample C Male 105.7
Sample D Male 85.4
Substantia nigra
nTPM: 109.6
Samples: 4

Max nTPM: 134.8
Min nTPM: 89.5
Sample A Female 134.8
Sample B Female 89.5
Sample C Male 119.2
Sample D Male 94.7
Superior colliculi
nTPM: 93.1
Samples: 4

Max nTPM: 112.5
Min nTPM: 56.1
Sample A Female 109.1
Sample B Female 56.1
Sample C Male 112.5
Sample D Male 94.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 87.3
Min nTPM: 62.9
Sample A Male 87.3
Sample B Male 63.2
Sample C Female 62.9
Sample D Female 71.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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