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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:459.9 nTPM
HPA:459.9 nTPM
FANTOM5:63.6 Scaled Tags Per Million
Pig:125.9 nTPM
Mouse:91.3 nTPM

THALAMUS - HPA Brain RNA-seq
Max nTPM 459.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 329.3
2497 Male, age 66, unknown 367.3
2032 Female, age 42, unknown 356.8
2396 Male, age 61, right hemisphere 263.7
Centromedial thalamic nucleus
nTPM: 350.2
2401 Male, age 76, right hemisphere 379.9
2279 Female, age 85, left hemisphere 320.5
Habenula
nTPM: 358.4
2276 Male, age 66, unknown 381.2
1957 Male, age 80, both hemispheres 366.0
2252 Male, age 62, unknown 352.4
2203 Male, age 61, left hemisphere 333.8
Lateral geniculate body
nTPM: 393.5
2857 Male, age 74, right hemisphere 506.8
2659 Male, age 66, unknown 427.3
2575 Female, age 94, right hemisphere 419.6
2035 Female, age 72, unknown 397.4
2399 Male, age 61, left hemisphere 394.6
2841 Male, age 80, both hemispheres 338.4
1953 Male, age 62, unknown 337.5
2106 Female, age 67, right hemisphere 326.2
Lateral thalamic nuclei
nTPM: 395.8
2661 Female, age 72, unknown 437.9
2573 Female, age 94, left hemisphere 434.9
2577 Male, age 74, both hemispheres 424.1
1903 Male, age 76, left hemisphere 365.8
2765 Female, age 67, both hemispheres 316.5
Medial dorsal thalamic nucleus
nTPM: 406.3
2492 Male, age 75, right hemisphere 533.6
2572 Female, age 94, right hemisphere 523.9
2576 Male, age 74, both hemispheres 424.7
1810 Male, age 48, unknown 416.1
2660 Female, age 72, unknown 404.5
1859 Male, age 76, both hemispheres 394.0
2026 Male, age 62, unknown 390.9
2402 Female, age 67, both hemispheres 386.0
2039 Female, age 72, unknown 384.0
2498 Male, age 66, unknown 381.8
2283 Male, age 80, right hemisphere 374.4
1930 Female, age 42, unknown 357.1
1971 Male, age 61, right hemisphere 310.4
Medial geniculate body
nTPM: 457.2
2571 Male, age 75, right hemisphere 752.0
2650 Female, age 94, left hemisphere 472.1
2657 Male, age 74, right hemisphere 441.1
2217 Female, age 72, unknown 405.9
2207 Male, age 80, right hemisphere 384.2
2049 Male, age 76, both hemispheres 378.8
1811 Female, age 42, unknown 366.5
Nucleus reuniens
nTPM: 349.1
2205 Male, age 80, left hemisphere 394.5
2210 Female, age 85, left hemisphere 336.0
2212 Female, age 67, left hemisphere 316.6
Nucleus rhomboideus
nTPM: 352.5
2206 Male, age 80, both hemispheres 408.3
2280 Female, age 85, left hemisphere 355.1
2213 Female, age 67, left hemisphere 294.1
Posterior thalamic nucleus
nTPM: 459.9
2649 Female, age 94, both hemispheres 600.3
2655 Male, age 74, right hemisphere 524.3
2495 Female, age 67, right hemisphere 393.7
2266 Male, age 76, right hemisphere 321.3
Pulvinar
nTPM: 389.2
2724 Male, age 74, right hemisphere 450.5
2582 Female, age 72, unknown 418.9
2496 Female, age 67, right hemisphere 395.3
2499 Male, age 66, unknown 390.2
1932 Male, age 80, right hemisphere 381.1
2398 Male, age 61, left hemisphere 380.3
1929 Male, age 48, unknown 378.5
1972 Male, age 62, unknown 370.0
1899 Female, age 42, unknown 368.1
2214 Male, age 76, right hemisphere 359.4
Subthalamic nucleus
nTPM: 366.5
2282 Male, age 61, both hemispheres 462.3
2779 Female, age 42, unknown 368.3
2216 Male, age 48, unknown 367.6
2056 Female, age 72, unknown 364.2
2275 Male, age 66, unknown 350.2
2406 Female, age 72, unknown 345.0
2124 Male, age 62, unknown 342.5
2658 Male, age 74, both hemispheres 332.0
Ventral posterolateral thalamic nucleus
nTPM: 419.2
2570 Male, age 75, right hemisphere 540.8
2581 Female, age 72, unknown 461.0
2578 Male, age 74, both hemispheres 402.2
2197 Male, age 80, both hemispheres 396.5
2740 Male, age 76, right hemisphere 374.2
2397 Male, age 61, right hemisphere 340.5
Ventral posteromedial thalamic nucleus
nTPM: 400.1
2281 Male, age 75, right hemisphere 504.5
2758 Male, age 80, both hemispheres 410.6
2653 Male, age 74, both hemispheres 388.7
2127 Male, age 76, right hemisphere 357.5
2202 Male, age 61, left hemisphere 339.1
Ventral thalamic nuclei
nTPM: 388.0
2858 Female, age 72, unknown 445.8
2580 Male, age 66, unknown 422.0
2204 Male, age 80, both hemispheres 389.2
2652 Male, age 74, left hemisphere 385.1
2291 Female, age 72, unknown 382.7
2285 Male, age 62, unknown 378.4
1845 Male, age 48, unknown 371.2
1912 Female, age 42, unknown 364.3
1860 Male, age 76, both hemispheres 353.4
Ventromedial nucleus
nTPM: 349.1
1982 Female, age 72, unknown 353.9
1822 Female, age 42, unknown 344.2
Zona incerta
nTPM: 353.7
2663 Female, age 72, unknown 385.2
2208 Male, age 80, right hemisphere 383.3
2403 Male, age 62, unknown 378.6
2822 Male, age 74, right hemisphere 311.0
2215 Male, age 66, unknown 310.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 63.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 63.6
FF:10154-103A1 76 years, female 63.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 125.9
Pig sample Sample description nTPM
Thalamus
nTPM: 125.9
Samples: 4

Max nTPM: 188.4
Min nTPM: 74.7
Sample A Female 188.4
Sample B Female 74.7
Sample C Male 158.8
Sample D Male 81.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 91.3
Samples: 4

Max nTPM: 116.7
Min nTPM: 77.2
Sample A Male 116.7
Sample B Male 82.8
Sample C Female 88.5
Sample D Female 77.2

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