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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:972.5 nTPM
HPA:972.5 nTPM
FANTOM5:260.3 Scaled Tags Per Million
Pig:32.7 nTPM
Allen mouse:2.3 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 972.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 948.2
2188 Female, age 91, both hemispheres 983.9
2090 Male, age 80, both hemispheres 950.2
2301 Female, age 85, both hemispheres 931.4
1984 Male, age 76, both hemispheres 927.2
Dorsal cochlear nucleus
nTPM: 941.8
2802 Male, age 74, right hemisphere 982.0
2187 Female, age 91, both hemispheres 973.8
2370 Male, age 61, both hemispheres 923.6
2378 Male, age 80, both hemispheres 922.0
2058 Male, age 76, both hemispheres 907.6
Dorsal tegmental nucleus
nTPM: 951.6
2083 Male, age 80, both hemispheres 970.6
2326 Male, age 74, both hemispheres 956.7
2358 Male, age 61, both hemispheres 943.5
1936 Male, age 76, left hemisphere 935.7
Dorsolateral tegmental area
nTPM: 935.4
2751 Female, age 85, both hemispheres 963.3
2654 Male, age 80, both hemispheres 950.9
2337 Male, age 61, both hemispheres 932.4
2141 Male, age 76, both hemispheres 931.5
2360 Male, age 74, both hemispheres 899.1
Kolliker-Fuse nucleus
nTPM: 951.2
2793 Female, age 91, left hemisphere 983.5
2163 Male, age 80, both hemispheres 955.7
2315 Male, age 76, right hemisphere 914.3
Lateral lemniscal nuclei
nTPM: 937.8
2453 Male, age 74, right hemisphere 972.8
2169 Male, age 76, both hemispheres 969.4
2746 Female, age 85, left hemisphere 930.5
2320 Female, age 91, left hemisphere 926.0
2036 Male, age 80, both hemispheres 890.4
Lateral parabrachial nucleus
nTPM: 940.6
2139 Female, age 85, right hemisphere 955.4
2792 Male, age 76, both hemispheres 950.8
2013 Male, age 80, both hemispheres 943.2
2790 Male, age 61, both hemispheres 912.9
Lateral vestibular nucleus
nTPM: 950.5
2311 Male, age 80, both hemispheres 951.6
2184 Male, age 76, both hemispheres 949.4
Locus coeruleus
nTPM: 937.3
2720 Male, age 74, both hemispheres 966.4
2123 Female, age 91, both hemispheres 952.8
2014 Male, age 55, unknown 941.9
2162 Male, age 80, both hemispheres 930.6
1980 Male, age 76, both hemispheres 925.5
2788 Male, age 74, unknown 924.5
2317 Female, age 72, unknown 919.2
Medial olivary nucleus
nTPM: 952.5
2851 Male, age 80, both hemispheres 980.4
1943 Male, age 61, both hemispheres 970.8
2138 Female, age 91, both hemispheres 931.1
1962 Male, age 76, both hemispheres 927.7
Medial parabrachial nucleus
nTPM: 955.4
2170 Female, age 91, both hemispheres 994.3
2854 Male, age 80, both hemispheres 982.2
2786 Male, age 76, both hemispheres 936.9
2156 Male, age 61, both hemispheres 936.2
2463 Female, age 85, right hemisphere 927.2
Medial periolivary nuclei
nTPM: 940.0
2171 Female, age 85, both hemispheres 955.7
2063 Male, age 76, both hemispheres 950.6
2458 Female, age 91, both hemispheres 940.8
2081 Male, age 80, both hemispheres 928.3
2791 Male, age 74, right hemisphere 924.6
Motor facial nucleus
nTPM: 951.9
2697 Female, age 85, both hemispheres 988.0
2365 Male, age 74, right hemisphere 974.1
2062 Male, age 76, both hemispheres 947.0
2795 Female, age 91, both hemispheres 940.3
2126 Male, age 61, both hemispheres 935.0
2327 Male, age 80, both hemispheres 926.9
Motor trigeminal nucleus
nTPM: 935.9
2335 Male, age 61, both hemispheres 951.5
2560 Male, age 74, both hemispheres 934.6
2309 Male, age 76, both hemispheres 932.5
2079 Male, age 80, both hemispheres 930.8
2321 Female, age 91, both hemispheres 930.1
Nuclei of the trapezoid body
nTPM: 941.3
1983 Male, age 76, both hemispheres 970.0
2159 Male, age 61, both hemispheres 964.2
2166 Male, age 80, both hemispheres 936.5
2735 Female, age 85, both hemispheres 929.1
2368 Female, age 91, both hemispheres 906.8
Paramedian reticular nucleus
nTPM: 970.3
2050 Female, age 85, both hemispheres 1022.9
2052 Male, age 76, both hemispheres 970.9
2313 Male, age 61, both hemispheres 946.6
2057 Male, age 80, both hemispheres 940.8
Pontine nuclei
nTPM: 954.8
1863 Male, age 55, unknown 1001.0
2787 Female, age 85, both hemispheres 977.0
2454 Male, age 74, left hemisphere 964.0
1968 Male, age 76, left hemisphere 953.4
2109 Female, age 72, unknown 950.1
2319 Female, age 91, both hemispheres 945.4
2727 Male, age 61, right hemisphere 928.2
2115 Male, age 80, left hemisphere 919.2
Pontine raphe nucleus
nTPM: 932.0
2122 Female, age 85, midline 937.1
2853 Male, age 76, midline 926.9
Posteroventral cochlear nucleus
nTPM: 949.4
2341 Male, age 80, both hemispheres 986.5
2135 Female, age 91, both hemispheres 957.7
2070 Male, age 76, both hemispheres 942.4
2752 Female, age 85, both hemispheres 938.9
2371 Male, age 61, both hemispheres 921.5
Principal sensory trigeminal nucleus
nTPM: 946.7
2367 Female, age 91, left hemisphere 967.5
2158 Male, age 61, both hemispheres 940.8
2324 Male, age 76, both hemispheres 940.4
2008 Male, age 80, left hemisphere 938.1
Reticular pontine nucleus, caudal
nTPM: 962.0
2559 Male, age 74, both hemispheres 970.5
2092 Male, age 76, both hemispheres 969.7
2457 Female, age 91, both hemispheres 968.0
2332 Male, age 80, right hemisphere 939.9
Reticular pontine nucleus, oral
nTPM: 972.5
2366 Female, age 91, both hemispheres 997.5
1939 Male, age 80, both hemispheres 984.1
2361 Male, age 74, both hemispheres 973.5
2167 Male, age 76, both hemispheres 958.4
2012 Female, age 85, both hemispheres 948.8
Reticulotegmental nucleus
nTPM: 951.3
2322 Female, age 91, both hemispheres 970.2
2452 Male, age 74, both hemispheres 951.3
2333 Male, age 80, both hemispheres 947.9
2325 Male, age 76, both hemispheres 935.8
Spinal trigeminal nucleus, oral
nTPM: 940.4
2164 Male, age 80, both hemispheres 971.6
2737 Female, age 85, both hemispheres 929.3
1978 Male, age 76, both hemispheres 920.4
Subcoeruleus area
nTPM: 946.5
1958 Male, age 80, both hemispheres 978.8
2369 Female, age 85, left hemisphere 951.5
2323 Female, age 91, left hemisphere 947.4
2451 Male, age 74, both hemispheres 928.3
2089 Male, age 76, left hemisphere 926.5
Superior olive
nTPM: 944.2
2020 Male, age 76, both hemispheres 961.8
1875 Female, age 85, both hemispheres 949.8
2561 Female, age 91, both hemispheres 943.6
2364 Male, age 74, right hemisphere 932.9
2329 Male, age 80, right hemisphere 932.8
Superior vestibular nucleus
nTPM: 953.7
2383 Male, age 74, both hemispheres 979.2
2015 Male, age 80, both hemispheres 953.9
2061 Male, age 76, both hemispheres 927.9
Ventral periolivary nuclei
nTPM: 940.5
2165 Male, age 80, both hemispheres 974.6
2023 Male, age 76, both hemispheres 938.9
2130 Female, age 85, both hemispheres 925.3
2794 Female, age 91, left hemisphere 923.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 949.8
2840 Female, age 85, both hemispheres 985.0
1959 Male, age 76, both hemispheres 978.4
2449 Male, age 74, both hemispheres 958.9
2161 Male, age 80, both hemispheres 937.7
2359 Male, age 61, both hemispheres 923.2
2456 Female, age 91, both hemispheres 915.6

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 260.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 260.3
FF:10182-103D2 60 years, female 318.0
FF:10165-103B3 76 years, female 202.6
Pons
Scaled Tags Per Million: 116.1
FF:10033-101E6 18-54 years, mixed 116.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 32.7
Pig sample Sample description nTPM
Pons
nTPM: 32.7
Samples: 4

Max nTPM: 39.3
Min nTPM: 22.4
Sample A Female 30.2
Sample B Female 22.4
Sample C Male 38.8
Sample D Male 39.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 2.3
74426449 Antisense, RP_051121_02_B10, Mouse strain C57BL/6J (56 days, male) 2.3

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