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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:940.1 nTPM
HPA:940.1 nTPM
GTEx:815.2 nTPM
FANTOM5:163.4 Scaled Tags Per Million
Pig:18.6 nTPM
Mouse:502.1 nTPM
Allen mouse:1.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 940.1
Sample id Sample description nTPM
Amygdala
nTPM: 940.1
2695 Female, age 67, right hemisphere 975.6
2814 Male, age 76, right hemisphere 948.3
2514 Male, age 75, right hemisphere 938.7
2517 Female, age 94, left hemisphere 921.4
1987 Female, age 91, left hemisphere 916.3
Basal amygdala
nTPM: 928.3
2827 Female, age 67, right hemisphere 943.4
2609 Male, age 75, right hemisphere 940.0
1955 Male, age 76, both hemispheres 937.7
2243 Female, age 91, right hemisphere 919.9
2110 Male, age 80, left hemisphere 917.0
2685 Female, age 94, left hemisphere 912.0
Central amygdala
nTPM: 930.0
2826 Female, age 94, left hemisphere 967.5
1905 Male, age 76, both hemispheres 949.9
2239 Male, age 80, left hemisphere 925.9
2701 Female, age 91, right hemisphere 907.6
2515 Male, age 75, right hemisphere 899.5
Corticomedial amygdala
nTPM: 920.6
2535 Female, age 67, right hemisphere 927.8
2829 Male, age 80, left hemisphere 927.8
2240 Male, age 76, both hemispheres 924.3
2429 Female, age 94, left hemisphere 919.9
2242 Female, age 91, right hemisphere 919.4
2428 Male, age 75, right hemisphere 904.3
Lateral amygdala
nTPM: 924.2
2534 Female, age 94, left hemisphere 942.5
1883 Male, age 76, both hemispheres 940.3
2830 Female, age 67, right hemisphere 937.0
2516 Male, age 75, right hemisphere 936.9
2256 Male, age 80, left hemisphere 898.1
2255 Female, age 91, right hemisphere 890.5
Stria terminalis, bed nucleus
nTPM: 909.2
1974 Female, age 91, both hemispheres 921.2
2201 Male, age 74, unknown 915.6
2486 Female, age 94, both hemispheres 890.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 815.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 815.2
Samples: 152

Max nTPM: 2804.5
Min nTPM: 251.2
Std nTPM: 325.6
Median nTPM: 769.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2804.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2034.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1996.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1884.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1659.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1643.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1588.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1587.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1378.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1372.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1157.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1132.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1099.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1072.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1058.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1051.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1045.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1041.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1031.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1031.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1031.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1014.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1010.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 993.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 990.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 964.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 961.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 961.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 960.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 956.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 956.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 954.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 942.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 930.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 924.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 911.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 905.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 905.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 897.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 895.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 892.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 886.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 878.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 877.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 869.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 842.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 839.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 837.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 832.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 832.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 829.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 827.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 825.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 822.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 817.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 816.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 813.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 812.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 810.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 807.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 805.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 805.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 804.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 803.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 802.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 801.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 798.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 793.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 793.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 791.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 791.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 790.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 787.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 779.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 775.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 772.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 766.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 763.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 761.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 760.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 753.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 749.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 749.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 739.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 735.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 732.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 716.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 714.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 700.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 698.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 697.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 691.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 690.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 689.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 684.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 684.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 680.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 676.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 675.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 674.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 673.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 671.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 659.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 657.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 653.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 653.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 649.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 646.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 644.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 642.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 642.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 634.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 630.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 626.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 621.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 620.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 620.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 617.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 602.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 598.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 597.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 596.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 594.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 593.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 586.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 585.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 581.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 574.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 572.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 571.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 567.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 566.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 564.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 560.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 553.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 549.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 548.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 545.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 540.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 536.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 527.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 519.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 508.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 494.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 479.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 460.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 458.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 428.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 419.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 415.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 411.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 251.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 163.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 163.4
FF:10151-102I7 76 years, female 163.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.6
Pig sample Sample description nTPM
Amygdala
nTPM: 18.6
Samples: 4

Max nTPM: 25.8
Min nTPM: 13.0
Sample A Female 25.8
Sample B Female 18.4
Sample C Male 17.0
Sample D Male 13.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 502.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 502.1
Samples: 4

Max nTPM: 585.4
Min nTPM: 445.9
Sample A Male 445.9
Sample B Male 517.5
Sample C Female 585.4
Sample D Female 459.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.2
74426449 Antisense, RP_051121_02_B10, Mouse strain C57BL/6J (56 days, male) 1.2

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