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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:336.4 nTPM
GTEx:336.4 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:483.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 336.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 336.4
Samples: 105

Max nTPM: 560.5
Min nTPM: 164.6
Std nTPM: 84.2
Median nTPM:
352_1 62 years, male 560.5
163_1 78 years, male 539.5
319_1 81 years, male 538.7
218_1 71 years, female 520.1
321_1 62 years, female 483.2
354_1 81 years, female 483.1
394_1 75 years, female 473.8
172_1 72 years, female 451.1
356_1 87 years, female 445.1
177_1 74 years, male 443.4
237_1 82 years, male 441.3
452_1 88 years, female 439.0
35_1 74 years, female 438.6
386_1 76 years, male 437.7
377_1 82 years, female 435.3
243_1 75 years, male 431.1
6_1 73 years, female 421.8
286_1 68 years, female 416.8
350_1 84 years, female 415.3
335_1 73 years, female 412.2
320_1 89 years, female 412.1
506_1 65 years, male 408.2
229_1 69 years, female 404.4
376_1 75 years, female 404.0
375_1 74 years, female 403.9
349_1 83 years, male 403.8
425_1 59 years, female 402.7
355_1 70 years, female 399.2
351_1 91 years, male 392.2
503_1 68 years, male 390.7
379_1 60 years, male 388.7
115_1 83 years, male 383.6
99_1 64 years, male 376.6
153_1 70 years, female 376.5
406_1 79 years, male 372.0
384_1 83 years, male 369.0
353_1 82 years, female 366.3
264_1 73 years, female 363.4
316_1 62 years, male 363.0
295_1 61 years, female 361.4
293_1 68 years, female 357.2
292_1 71 years, male 346.1
173_1 67 years, male 345.8
217_1 76 years, male 343.1
322_1 76 years, male 343.0
404_1 82 years, female 339.7
318_1 68 years, male 338.9
405_1 91 years, male 336.6
517_1 88 years, male 335.4
4_1 88 years, female 333.8
480_1 63 years, male 332.3
396_1 62 years, male 332.1
246_1 77 years, male 331.8
189_1 76 years, male 330.8
42_1 85 years, male 327.8
468_1 89 years, male 326.1
389_1 86 years, female 324.7
137_1 83 years, male 321.1
142_1 61 years, female 318.2
447_1 81 years, male 316.2
414_1 84 years, female 315.6
162_1 79 years, female 314.5
17_1 71 years, male 314.0
126_1 63 years, male 309.7
313_1 79 years, female 308.7
145_1 84 years, male 305.6
9_1 66 years, female 305.1
251_1 78 years, male 302.9
291_1 76 years, male 298.7
2_1 77 years, female 294.6
117_1 61 years, male 290.0
415_1 77 years, female 289.9
120_1 70 years, female 289.3
413_1 59 years, female 288.8
266_1 85 years, male 286.9
317_1 60 years, male 279.4
324_1 76 years, male 279.4
265_1 87 years, male 277.8
526_1 61 years, male 273.8
518_1 75 years, female 269.5
81_1 67 years, male 267.8
348_1 84 years, male 267.5
499_1 55 years, female 267.0
18_1 88 years, male 260.0
490_1 67 years, female 259.0
311_1 78 years, male 255.3
466_1 57 years, female 249.3
32_1 67 years, male 247.4
288_1 66 years, female 241.3
347_1 72 years, male 241.1
495_1 57 years, female 240.3
43_1 64 years, female 238.7
254_1 77 years, female 238.0
149_1 88 years, male 237.0
109_1 81 years, female 234.1
119_1 70 years, female 233.1
41_1 94 years, female 229.4
501_1 88 years, male 222.5
139_1 64 years, female 216.4
315_1 62 years, female 213.1
307_1 66 years, female 205.9
314_1 67 years, male 188.8
308_1 70 years, female 183.0
89_1 63 years, male 180.2
491_1 89 years, female 164.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 66.7
FF:10030-101E3 24-65 years, mixed 66.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21.6
Pig sample Sample description nTPM
Retina
nTPM: 21.6
Samples: 4

Max nTPM: 26.2
Min nTPM: 18.2
Sample A Female 23.5
Sample B Female 18.2
Sample C Male 26.2
Sample D Male 18.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 483.0
Mouse sample Sample description nTPM
Retina
nTPM: 483.0
Samples: 4

Max nTPM: 583.8
Min nTPM: 401.9
Sample A Male 522.4
Sample B Male 423.9
Sample C Female 583.8
Sample D Female 401.9

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