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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:952.6 nTPM
HPA:952.6 nTPM
GTEx:777.1 nTPM
FANTOM5:233.7 Scaled Tags Per Million
Pig:22.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 952.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 952.6
2565 Male, age 75, midline 974.0
1981 Female, age 72, midline 968.6
2194 Female, age 79, both hemispheres 948.5
2048 Male, age 55, midline 948.3
2816 Male, age 47, midline 923.5
Cervical spinal cord, dorsal horn
nTPM: 941.6
2173 Female, age 72, unknown 985.1
2296 Male, age 66, both hemispheres 965.9
2069 Male, age 47, both hemispheres 944.4
1877 Male, age 55, unknown 932.3
2721 Male, age 90, both hemispheres 913.3
2297 Male, age 75, both hemispheres 908.4
Cervical spinal cord, ventral horn
nTPM: 944.0
2809 Male, age 90, both hemispheres 958.0
2098 Female, age 72, unknown 951.5
2068 Male, age 55, unknown 948.9
2820 Female, age 79, both hemispheres 939.3
2480 Male, age 75, both hemispheres 938.7
2295 Male, age 66, both hemispheres 927.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 777.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 777.1
Samples: 159

Max nTPM: 1498.4
Min nTPM: 265.1
Std nTPM: 234.3
Median nTPM: 754.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1498.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1471.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1396.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1357.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1316.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1303.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1264.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1230.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1215.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1171.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1170.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1165.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1160.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1155.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1111.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1106.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1105.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1096.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1085.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1048.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1036.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1033.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1026.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1004.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 999.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 982.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 980.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 979.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 976.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 958.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 957.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 929.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 928.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 923.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 920.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 915.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 915.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 913.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 911.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 897.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 895.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 894.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 880.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 875.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 875.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 871.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 865.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 864.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 856.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 855.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 853.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 851.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 848.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 848.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 843.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 842.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 834.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 832.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 827.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 824.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 818.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 813.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 804.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 804.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 803.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 800.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 799.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 798.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 795.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 795.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 783.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 777.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 775.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 772.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 762.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 761.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 759.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 757.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 757.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 754.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 754.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 753.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 743.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 739.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 734.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 733.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 731.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 731.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 730.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 729.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 727.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 725.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 722.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 717.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 716.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 712.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 711.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 708.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 705.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 704.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 698.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 693.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 691.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 686.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 680.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 676.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 666.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 666.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 659.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 643.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 639.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 638.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 635.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 634.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 631.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 628.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 620.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 611.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 610.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 610.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 600.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 598.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 594.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 590.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 589.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 589.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 584.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 574.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 574.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 573.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 558.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 557.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 551.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 548.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 539.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 536.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 526.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 513.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 511.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 510.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 507.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 502.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 500.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 499.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 498.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 489.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 485.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 466.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 463.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 449.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 449.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 443.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 440.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 426.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 409.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 403.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 326.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 303.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 265.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 233.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 233.7
FF:10181-103D1 60 years, female 352.0
FF:10159-103A6 76 years, female 115.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 22.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 18.2
Samples: 4

Max nTPM: 19.2
Min nTPM: 17.3
Sample A Female 18.0
Sample B Female 18.3
Sample C Male 19.2
Sample D Male 17.3
Ventral spinal cord
nTPM: 22.2
Samples: 4

Max nTPM: 26.4
Min nTPM: 19.0
Sample A Female 19.2
Sample B Female 24.3
Sample C Male 26.4
Sample D Male 19.0

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