MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:955.6 nTPM
HPA:955.6 nTPM
GTEx:858.1 nTPM
FANTOM5:241.2 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:419.3 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 955.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 932.1
2666 Male, age 74, left hemisphere 949.2
2019 Male, age 18, unknown 944.4
1870 Female, age 42, unknown 941.9
1827 Male, age 72, unknown 937.3
2411 Female, age 72, unknown 937.0
2219 Male, age 76, both hemispheres 926.4
1830 Male, age 51, unknown 924.2
1833 Male, age 53, unknown 923.6
2586 Male, age 75, left hemisphere 920.2
2828 Female, age 72, unknown 917.2
Dorsal raphe nucleus
nTPM: 923.6
2750 Male, age 76, both hemispheres 936.1
1828 Male, age 53, unknown 934.3
2047 Male, age 72, unknown 922.3
2298 Female, age 72, unknown 915.8
2016 Female, age 72, unknown 909.6
Inferior colliculus
nTPM: 920.0
2849 Male, age 72, unknown 926.9
1890 Male, age 53, unknown 924.1
2097 Female, age 72, unknown 919.6
1848 Female, age 42, unknown 909.6
Median raphe nucleus
nTPM: 942.1
2220 Male, age 76, midline 942.1
Pedunculopontine tegmental nucleus
nTPM: 954.5
2338 Male, age 61, both hemispheres 968.5
2334 Male, age 80, both hemispheres 949.4
1921 Female, age 85, both hemispheres 945.6
Periaquaductal grey, anterior
nTPM: 919.5
1947 Male, age 18, unknown 923.5
2502 Female, age 75, unknown 919.6
1795 Male, age 51, unknown 915.3
Periaquaductal grey, dorsal
nTPM: 904.1
2850 Male, age 76, both hemispheres 925.6
1831 Male, age 72, unknown 906.8
1840 Male, age 53, unknown 896.1
2464 Female, age 72, unknown 888.0
Periaquaductal grey, lateral
nTPM: 906.9
2053 Male, age 18, unknown 916.3
2272 Male, age 74, both hemispheres 905.0
2140 Male, age 76, both hemispheres 899.3
Pretectal area
nTPM: 933.6
1817 Female, age 42, unknown 963.3
2007 Male, age 72, unknown 961.2
1944 Female, age 72, unknown 953.0
1816 Male, age 51, unknown 945.2
1815 Male, age 53, unknown 944.3
2667 Female, age 75, unknown 928.3
2407 Male, age 75, both hemispheres 920.7
2825 Male, age 18, unknown 920.5
2224 Female, age 72, unknown 919.9
2273 Male, age 74, both hemispheres 906.7
2316 Male, age 76, right hemisphere 906.6
Red nucleus
nTPM: 955.6
2503 Female, age 72, unknown 986.1
1821 Female, age 72, unknown 980.7
2725 Female, age 75, unknown 980.6
1865 Male, age 51, unknown 977.9
1904 Male, age 53, unknown 950.0
2588 Male, age 74, left hemisphere 948.6
2785 Male, age 18, unknown 945.1
2823 Male, age 76, right hemisphere 943.3
1954 Female, age 42, unknown 942.9
2769 Male, age 72, unknown 942.7
2227 Male, age 72, unknown 941.7
2584 Male, age 75, left hemisphere 928.0
Substantia nigra
nTPM: 943.8
1916 Female, age 42, unknown 987.2
1941 Male, age 53, unknown 954.8
1889 Female, age 72, unknown 953.0
2699 Male, age 18, unknown 951.9
1851 Male, age 51, unknown 949.3
2665 Male, age 74, both hemispheres 942.9
2590 Female, age 75, unknown 931.3
2409 Female, age 72, unknown 926.2
2583 Male, age 75, right hemisphere 925.8
2241 Male, age 72, unknown 915.2
Superior colliculus
nTPM: 926.3
2587 Male, age 74, left hemisphere 961.7
1895 Male, age 76, right hemisphere 941.4
1796 Male, age 53, unknown 930.4
1995 Male, age 72, unknown 930.4
1913 Female, age 42, unknown 927.7
2668 Female, age 75, unknown 919.7
2087 Female, age 72, unknown 919.4
1839 Male, age 51, unknown 916.9
2261 Male, age 18, unknown 910.2
2664 Male, age 75, both hemispheres 904.9
Ventral tegmental area
nTPM: 929.5
2223 Female, age 72, unknown 949.5
1915 Female, age 42, unknown 947.7
2218 Male, age 76, both hemispheres 939.7
2410 Female, age 72, unknown 917.1
1942 Male, age 51, unknown 914.6
2021 Male, age 53, unknown 908.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 858.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 858.1
Samples: 139

Max nTPM: 2560.6
Min nTPM: 398.6
Std nTPM: 287.2
Median nTPM: 806.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2560.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2224.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1527.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1456.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1350.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1345.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1331.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1290.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1289.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1283.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1229.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 241.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 241.2
FF:10158-103A5 76 years, female 241.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.4
Pig sample Sample description nTPM
Midbrain
nTPM: 24.1
Samples: 4

Max nTPM: 25.6
Min nTPM: 22.8
Sample A Female 23.6
Sample B Female 25.6
Sample C Male 24.5
Sample D Male 22.8
Periaqueductal gray
nTPM: 22.2
Samples: 3

Max nTPM: 25.2
Min nTPM: 19.0
Sample B Female 22.3
Sample C Male 25.2
Sample D Male 19.0
Substantia nigra
nTPM: 22.6
Samples: 4

Max nTPM: 33.1
Min nTPM: 13.7
Sample A Female 33.1
Sample B Female 19.3
Sample C Male 24.4
Sample D Male 13.7
Superior colliculi
nTPM: 25.4
Samples: 4

Max nTPM: 32.9
Min nTPM: 15.8
Sample A Female 32.9
Sample B Female 15.8
Sample C Male 30.2
Sample D Male 22.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 419.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 419.3
Samples: 4

Max nTPM: 488.6
Min nTPM: 368.6
Sample A Male 488.6
Sample B Male 418.0
Sample C Female 368.6
Sample D Female 402.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
74426449 Antisense, RP_051121_02_B10, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.