We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MT1E
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • MT1E
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:364.4 nTPM
HPA:364.4 nTPM
GTEx:415.2 nTPM
FANTOM5:632.8 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 364.4
Sample id Sample description nTPM
Amygdala
nTPM: 364.4
2814 Male, age 76, right hemisphere 384.3
2695 Female, age 67, right hemisphere 376.6
1987 Female, age 91, left hemisphere 360.0
2514 Male, age 75, right hemisphere 353.8
2517 Female, age 94, left hemisphere 347.1
Basal amygdala
nTPM: 344.8
2609 Male, age 75, right hemisphere 370.8
2110 Male, age 80, left hemisphere 352.3
1955 Male, age 76, both hemispheres 346.3
2243 Female, age 91, right hemisphere 339.5
2685 Female, age 94, left hemisphere 334.3
2827 Female, age 67, right hemisphere 325.7
Central amygdala
nTPM: 350.2
1905 Male, age 76, both hemispheres 364.3
2515 Male, age 75, right hemisphere 356.6
2239 Male, age 80, left hemisphere 345.0
2701 Female, age 91, right hemisphere 344.4
2826 Female, age 94, left hemisphere 340.8
Corticomedial amygdala
nTPM: 344.3
2428 Male, age 75, right hemisphere 366.7
2829 Male, age 80, left hemisphere 359.7
2429 Female, age 94, left hemisphere 346.0
2242 Female, age 91, right hemisphere 333.2
2240 Male, age 76, both hemispheres 331.7
2535 Female, age 67, right hemisphere 328.5
Lateral amygdala
nTPM: 342.8
1883 Male, age 76, both hemispheres 357.4
2516 Male, age 75, right hemisphere 356.2
2256 Male, age 80, left hemisphere 342.6
2255 Female, age 91, right hemisphere 338.3
2830 Female, age 67, right hemisphere 331.4
2534 Female, age 94, left hemisphere 331.2
Stria terminalis, bed nucleus
nTPM: 334.7
2486 Female, age 94, both hemispheres 338.8
2201 Male, age 74, unknown 333.2
1974 Female, age 91, both hemispheres 332.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 415.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 415.2
Samples: 152

Max nTPM: 1303.9
Min nTPM: 75.4
Std nTPM: 231.8
Median nTPM: 356.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1303.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1257.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1198.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1171.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1071.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 984.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 880.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 844.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 825.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 823.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 808.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 791.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 730.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 720.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 717.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 701.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 691.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 681.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 667.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 665.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 660.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 649.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 644.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 640.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 628.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 620.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 611.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 594.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 584.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 558.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 553.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 531.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 519.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 518.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 515.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 511.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 506.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 504.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 501.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 501.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 499.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 497.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 488.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 484.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 475.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 475.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 471.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 468.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 468.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 468.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 460.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 455.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 450.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 450.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 446.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 434.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 431.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 429.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 426.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 413.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 412.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 407.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 405.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 404.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 402.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 399.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 399.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 394.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 393.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 392.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 378.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 374.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 367.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 367.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 364.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 359.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 353.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 350.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 348.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 346.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 336.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 335.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 335.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 332.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 330.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 327.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 327.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 321.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 321.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 320.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 310.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 306.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 305.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 302.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 294.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 293.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 291.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 286.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 284.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 283.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 283.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 281.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 280.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 280.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 277.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 277.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 277.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 277.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 274.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 273.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 268.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 268.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 265.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 264.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 259.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 258.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 250.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 247.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 241.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 237.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 233.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 233.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 228.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 227.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 222.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 220.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 211.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 211.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 208.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 207.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 207.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 203.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 191.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 188.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 187.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 183.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 175.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 170.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 169.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 168.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 166.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 165.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 164.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 157.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 157.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 153.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 151.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 147.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 141.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 139.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 138.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 75.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 632.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 632.8
FF:10151-102I7 76 years, female 632.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.